FC875678

Overview
NameFC875678
Unique NameFC875678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875678_ssr457 microsatellite FC875678_ssr457:457..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:2..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH15_ARATH (Probable S-acyltransferase At4g00840 OS=Arabidopsis thaliana GN=At4g00840 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44
Identity = 92/170 (54.12%), Postives = 108/170 (63.53%), Query Frame = 2
Query:  191 INLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRG--GVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            +NLF+ CSGLKVLGYFMILL               T  P L+RG  G  S     II +FH LL+ML+WSY   VF DPGSVPE++R          G +LEAGTS+          +G   S+G+C +C+N KPPRCHHCSVCQRCVLKMDHHCVW+VNCVGARNY  F
Sbjct:    1 MNLFRFCSGLKVLGYFMILLVVAVVGVSYYAVVVSTWWPILIRGDHGALSALAALIIFVFHFLLIMLLWSYFTTVFTDPGSVPEHFRREMGG-----GDSLEAGTSTD---------QGAFGSLGYCTKCRNVKPPRCHHCSVCQRCVLKMDHHCVWIVNCVGARNYKFF 156          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH14_ARATH (Probable S-acyltransferase At3g60800 OS=Arabidopsis thaliana GN=At3g60800 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.133e-38
Identity = 85/171 (49.71%), Postives = 97/171 (56.73%), Query Frame = 2
Query:  194 NLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSS--QSLDNVG--PDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            N+FK C+ L+ LG  MILL                 GP L +GG+ S    +I+ILFH LL ML+WSY  VVF DPG VP NWR            + E G S    SLD VG   D+   +  V FC +C   KP RCHHCSVC RCVLKMDHHCVWVVNCVGA NY  F
Sbjct:   11 NVFKFCTALRGLGSIMILLVLGVVGVTYYAVVLTNYGPALSQGGLDSLAALTILILFHFLLAMLLWSYFSVVFTDPGVVPPNWRP---------STDEERGESDPLNSLDFVGLQSDSSSSNPRVRFCRKCNQLKPSRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYF 172          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH18_ARATH (Probable S-acyltransferase At4g22750 OS=Arabidopsis thaliana GN=At4g22750 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.996e-36
Identity = 74/167 (44.31%), Postives = 90/167 (53.89%), Query Frame = 2
Query:  194 NLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            N+FK C+ L+ LG  MIL+                 GP LL GGV S     ++  FH LL+ML+WSY  VV  DPG VP  WR           +++E    +Q+L          S  V +C +C   KPPR HHCSVC RC+LKMDHHCVWVVNCVGA NY  F
Sbjct:    4 NVFKFCTALRALGSIMILIVIGIIGFTYYAVVVVNYGPALLIGGVDSLLSVLVLAFFHFLLIMLLWSYFSVVVTDPGGVPTGWRPE---------LDIEKSEGNQALIGEASVGDSSSHGVRYCRKCNQYKPPRSHHCSVCGRCILKMDHHCVWVVNCVGANNYKSF 161          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC6_ARATH (Probable S-acyltransferase At3g09320 OS=Arabidopsis thaliana GN=At3g09320 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  341 GFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLFF 697
            G +    F  L +M +++Y + VF DPG VP N+               +  +    +   G D R       +C +C + KPPR HHC VC+RCVL+MDHHC+W+ NCVG  NY +FF
Sbjct:   42 GIANAAAFTALALMCIYNYSIAVFRDPGRVPLNYMPDVE----------DPESPVHEIKRKGGDLR-------YCQKCSHFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHTNYKVFF 143          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH20_MOUSE (Probable palmitoyltransferase ZDHHC20 OS=Mus musculus GN=Zdhhc20 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENW---RXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ FH+  VM VWSY M +F  P S  + +                  +     ++  ++       S+++ +C++CQ  KP R HHCS C RCVLKMDHHC WV NCVG  NY  F
Sbjct:   55 LVAFHLFFVMFVWSYWMTIFTSPASPSKEFYLSNSEKERYEKEFSQERQQDILRRAARDLPIYTTSASKAIRYCEKCQLIKPDRAHHCSACDRCVLKMDHHCPWVNNCVGFTNYKFF 171          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH20_BOVIN (Probable palmitoyltransferase ZDHHC20 OS=Bos taurus GN=ZDHHC20 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 46/118 (38.98%), Postives = 56/118 (47.46%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPD----ARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ FH+  VM VWSY M +F  P S P                        + L     D        S++V +C+RCQ  KP R HHCS C  C+LKMDHHC WV NCVG  NY  F
Sbjct:   55 LVAFHLFFVMFVWSYWMTIFTSPAS-PSKEFCLSNSEKERYEKEFSQERQQEILRRAARDLPIYTTSASKTVRYCERCQLIKPDRAHHCSACDMCILKMDHHCPWVNNCVGFSNYKFF 171          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC2_MOUSE (Palmitoyltransferase ZDHHC2 OS=Mus musculus GN=Zdhhc2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPD----ARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ +H+L  M VWSY   +F  P +  + +                     + L     D     R  S ++ +CDRCQ  KP RCHHCSVC +C+LKMDHHC WV NCVG  NY  F
Sbjct:   55 LMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKELLER-EPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 171          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC2_HUMAN (Palmitoyltransferase ZDHHC2 OS=Homo sapiens GN=ZDHHC2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.202e-18
Identity = 45/118 (38.14%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPD----ARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ +H+L  M VWSY   +F  P +  + +                     + L     D     R  S ++ +CDRCQ  KP RCHHCSVC +C+LKMDHHC WV NCVG  NY  F
Sbjct:   56 LMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKDLLER-EPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCQLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 172          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDHC2_RAT (Palmitoyltransferase ZDHHC2 OS=Rattus norvegicus GN=Zdhhc2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPD----ARGPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ +H+L  M VWSY   +F  P +  + +                     + L     D     R  S ++ +CDRC+  KP RCHHCSVC +C+LKMDHHC WV NCVG  NY  F
Sbjct:   55 LMAYHLLFAMFVWSYWKTIFTLPMNPSKEFHLSYAEKELLER-EPRGEAHQEVLRRAAKDLPIYTRTMSGAIRYCDRCRLIKPDRCHHCSVCDKCILKMDHHCPWVNNCVGFSNYKFF 171          
BLAST of FC875678 vs. ExPASy Swiss-Prot
Match: ZDH20_HUMAN (Probable palmitoyltransferase ZDHHC20 OS=Homo sapiens GN=ZDHHC20 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 44/122 (36.07%), Postives = 59/122 (48.36%), Query Frame = 2
Query:  353 IILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDAR--------GPSRSVGFCDRCQNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYSLF 694
            ++ FH+  VM VWSY M +F  P S  + +               E   S +    +   A           S+++ +C++CQ  KP R HHCS C  C+LKMDHHC WV NCVG  NY  F
Sbjct:   55 LVAFHLFFVMFVWSYWMTIFTSPASPSKEFYLSNSEKE-----RYEKEFSQERQQEILRRAARALPIYTTSASKTIRYCEKCQLIKPDRAHHCSACDSCILKMDHHCPWVNNCVGFSNYKFF 171          
The following BLAST results are available for this feature:
BLAST of FC875678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
ZDH15_ARATH1.992e-4454.12Probable S-acyltransferase At4g00840 OS=Arabidopsi... [more]
ZDH14_ARATH2.133e-3849.71Probable S-acyltransferase At3g60800 OS=Arabidopsi... [more]
ZDH18_ARATH1.996e-3644.31Probable S-acyltransferase At4g22750 OS=Arabidopsi... [more]
ZDHC6_ARATH2.896e-1937.82Probable S-acyltransferase At3g09320 OS=Arabidopsi... [more]
ZDH20_MOUSE8.427e-1936.75Probable palmitoyltransferase ZDHHC20 OS=Mus muscu... [more]
ZDH20_BOVIN1.101e-1838.98Probable palmitoyltransferase ZDHHC20 OS=Bos tauru... [more]
ZDHC2_MOUSE3.202e-1838.14Palmitoyltransferase ZDHHC2 OS=Mus musculus GN=Zdh... [more]
ZDHC2_HUMAN3.202e-1838.14Palmitoyltransferase ZDHHC2 OS=Homo sapiens GN=ZDH... [more]
ZDHC2_RAT9.317e-1837.29Palmitoyltransferase ZDHHC2 OS=Rattus norvegicus G... [more]
ZDH20_HUMAN1.589e-1736.07Probable palmitoyltransferase ZDHHC20 OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401F03EF CTVClemen1 Citrus clementina cDNA clone C31401F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875678 ID=FC875678; Name=FC875678; organism=Citrus clementina; type=EST; length=700bp
GGTGCTCTGTTCCCAGTACAAACTAATCTCGAACTGTGCCCTAATTTCTC
TTCTGAATTAAAGTTACCGGGACACATCAACTCCAGGCAAGAACAGGTAA
AACCTGGCTTCGGATATCTGGAAACGCCTGTTCCCACCGCGATCCAGAAG
ATACCAACCAATCATCCCCGAAATCAACTTGGGCATGGACATAAACCTTT
TCAAGCTCTGTTCCGGCCTCAAAGTGCTGGGCTACTTCATGATCCTGCTA
GTGGCCGCAATTATCGCTGTGTCGTACTACGCCGTCGTTGTAATTACCTG
TGGCCCACAGTTGCTTCGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAA
TAATTATTCTATTCCATATTCTGCTTGTAATGTTGGTATGGAGCTATGTT
ATGGTAGTGTTTTGGGACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGT
TTCAGTATCATCATCATCATCATCGGGGGTGAATTTAGAGGCTGGTACTT
CTTCTCAATCATTAGATAACGTGGGACCGGATGCACGGGGTCCTTCACGG
TCGGTAGGCTTCTGTGATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCA
TCATTGTTCTGTTTGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTG
TTTGGGTGGTGAATTGTGTTGGAGCGCGCAACTACAGTCTTTTCTTCTTT
back to top