FC875680

Overview
NameFC875680
Unique NameFC875680
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6166 contig Ccv1_Contig6166:965..1723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875680 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.400e-80
Identity = 139/153 (90.85%), Postives = 147/153 (96.08%), Query Frame = 1 
Query:   88 KTAADKRFKTLPPSEALPRHETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE 546
            K   +KRFKTLPP+E+LPR+ET+GGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHG+FEAASFGGTNIDPTAWEDKK  GESRFPAQVRV+TRKICEPLEEDSFRPILHHYDGPKFRLELN+PEAISLLDIFEE
Sbjct:   52 KNGVEKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204
The following BLAST results are available for this feature:
BLAST of FC875680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
B2_DAUCA4.400e-8090.85B2 protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC31401F05EF CTVClemen1 Citrus clementina cDNA clone C31401F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875680 ID=FC875680; Name=FC875680; organism=Citrus clementina; type=EST; length=758bp
GGACTTGGAAGCAAGAGTGGCAAGAAGAACAGCAACAAGGAGAACAATAA
CAAAGATGGTGACAATAATTCCGATAATAAGGACACTAAGACTGCTGCTG
ATAAGAGGTTCAAGACTCTCCCACCCTCGGAGGCTTTGCCGAGACACGAA
ACCATTGGTGGCTATATTTTTGTCTGTAACAATGATACCATGGCTGAGAA
TCTCAAAAGACAGCTCTTTGGATTGCCACCACGTTACAGGGATTCGGTGA
GAGCTATAACCCCTGGCTTGCCCCTTTTCCTTTATAACTATTCCACCCAC
CAGCTGCATGGAATTTTTGAGGCTGCTAGCTTTGGAGGCACAAATATTGA
TCCTACAGCCTGGGAAGACAAGAAATGCCCTGGCGAATCACGATTCCCAG
CTCAGGTCCGGGTTGTTACACGGAAAATCTGTGAACCGCTTGAAGAGGAT
TCCTTCAGGCCAATTCTCCATCACTATGATGGCCCCAAGTTCCGCCTTGA
ACTAAATGTGCCTGAGGCAATTTCTCTCTTGGACATATTTGAAGAACAAG
ACTCTTGAGCAATTGCTGCAATACAACCATATGAAACAAAAGCTTACAGA
TACAAGTACCAGTTAGTGAAGTTACACAGCATAAAAGTGGTTTGATGATA
CAAATAGGGAAAGAAATTTAGAGTTTGTGGCCTTCATTATATTGATAGTT
TAGAGAGAGTATGTGAGGGGAAGTATGAGAGCTGAATATGCACAGTGTCC
TTGATGTA
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