FC875683

Overview
NameFC875683
Unique NameFC875683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875683_ssr45 microsatellite FC875683_ssr45:45..62. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875683_ssr565 microsatellite FC875683_ssr565:565..576. BLAST: Citrus ESTs to Prunus persica proteins V1
FC875683_ssr268 microsatellite FC875683_ssr268:268..279. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10495 contig Ccv1_Contig10495:98..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1
Query:  184 MALIAYLVLFMAMTGHSTALYCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            MA +   +L +++ GHS+A +C+CK GLS +VLQ  +DYACG GADC P      C+NP+ V+ HCNYAVNS+FQ+KGQ+PGSC+F
Sbjct:    1 MAALVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNF 86          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.797e-24
Identity = 49/86 (56.98%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  184 MALIAYLVLFMAMTGHSTALYCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            MA +   +L + M GH++A +C+CK GLS SVLQK +DYACG GADC P    G C+NP+ V+ HCNYAVNS+FQ+KGQ   SC+F
Sbjct:    1 MAPLVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNF 86          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  184 MALIAYLVLFMAMTGHSTALYCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            M+++  L L ++M  +S A YCLCK+G ++ VLQKAIDYACG GADCT I   G C+ PNTV++HC+ AVNSY+Q+K  +  +CDF
Sbjct:    1 MSVLLPLCLIISMFTYSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDF 85          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  244 YCLCKQGLSQSVLQKAIDYACGAG-ADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            YC+   G+    LQ A+D+ACG G ++C+ I     C+ PN V+ H ++A NSY+Q++G+  GSCDF
Sbjct:  272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDF 338          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  244 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            +C+ K+G +   LQ ++D+ACG G DC  I   G C+ PN V  H  YA+N YFQ+  + P  CDF
Sbjct:  364 WCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDF 429          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 28/67 (41.79%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  244 YCLCKQGLSQSVLQKAIDYACGAG-ADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            +C+ K+ + + +LQ A+D+ACG G  DC+ ++Q   C+ P+ V  H  YA N+Y+Q+ G+  GSCDF
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDF 426          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1
Query:  244 YCLCKQGLSQSVLQKAIDYACGAGA-DCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            YC  ++G    +LQ A+D+ACG G  DC+PI Q   C+ P+ V  H NYA ++Y+ + G  P +C+F
Sbjct:  368 YCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNF 434          
BLAST of FC875683 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  244 YCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSYFQRKGQTPGSCDF 441
            +C+ K G + + LQ  I+YACG   DC PI   G C++PN++Q H +Y +N+Y+Q  G T  +CDF
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDF 441          
The following BLAST results are available for this feature:
BLAST of FC875683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
E13L2_ARATH2.123e-2555.81Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L3_ARATH1.797e-2456.98Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L4_ARATH2.869e-2254.65Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH5.996e-1243.28Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E137_ARATH1.023e-1143.94Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E133_ARATH1.023e-1141.79Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH1.744e-1141.79Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13B_WHEAT2.976e-1143.94Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
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Properties
Property NameValue
Genbank descriptionC31401F09EF CTVClemen1 Citrus clementina cDNA clone C31401F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875683 ID=FC875683; Name=FC875683; organism=Citrus clementina; type=EST; length=708bp
GGCTTTCACCTTCACCACCCGCTGTCTAGAATTCTCCTTTCTCGCTCTCT
CTCTCTCTCTCTTTTTATTTTTCTCTCTCCCAGGCACAGAAACTCAACCA
TCTTTCATTTCAGCCGCTACCCACTTTCTCTTAAAAGGAGTTTTAATTCC
CCACCATTTTTGCCTCACGATCTTGCATCGGTCATGGCTCTTATAGCTTA
TTTAGTGCTTTTCATGGCCATGACTGGCCATTCAACTGCACTTTATTGCT
TGTGCAAACAAGGGTTGAGTCAGTCAGTCCTCCAGAAAGCTATAGACTAT
GCTTGTGGAGCCGGAGCTGACTGTACTCCAATCCTTCAAAACGGTGTGTG
TTGGAACCCCAACACGGTGCAAGATCACTGCAACTATGCCGTTAACAGCT
ATTTCCAGAGAAAGGGCCAAACTCCTGGAAGCTGTGATTTTGCAGGCGCT
GCTGCCACTAGTCCCAATCCCCCTTCCAATGCCGGCGGCGGTTGTGTTTA
CCCATCAACTGGCAGCCCCGGGACAGGCGCAGGCACACCAACCACAACAC
CGACTACAACACCAACGACGACGACGCCTACAGGCACAAGCCCGGGCACA
TCCACGGTATTCGGTGGCACTGGCAGCTCGCTGGGCCCAACCGGCACCAC
TGGCATCAATGACTCTAGTAGTGTGGCTCTCTTTAACTCACTACTTTTTC
TCTCTTTT
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