FC875702

Overview
NameFC875702
Unique NameFC875702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:4..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.648e-50
Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  173 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT  ETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q P
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSP 233          

HSP 2 Score: 24.6386 bits (52), Expect = 5.648e-50
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VI  +W
Sbjct:  234 KPSCHAVIVGQW 245          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 7.388e-50
Identity = 93/163 (57.06%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  185 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT  ETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAP 164          

HSP 2 Score: 27.335 bits (59), Expect = 7.388e-50
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  655 ATKPSCHEVITDEW 696
            A KPSCH+V+T  W
Sbjct:  163 APKPSCHDVLTGRW 176          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 9.591e-50
Identity = 91/167 (54.49%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  173 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT  ETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPP
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPP 248          

HSP 2 Score: 24.6386 bits (52), Expect = 9.591e-50
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VI  +W
Sbjct:  249 KPSCHAVIAGQW 260          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 9.594e-50
Identity = 98/185 (52.97%), Postives = 119/185 (64.32%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT  ETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ P
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSP 237          

HSP 2 Score: 23.483 bits (49), Expect = 9.594e-50
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPS H+VIT  W
Sbjct:  238 KPSSHDVITSRW 249          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.598e-50
Identity = 94/186 (50.54%), Postives = 117/186 (62.90%), Query Frame = 2
Query:  119 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT  ETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q P
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSP 227          

HSP 2 Score: 25.409 bits (54), Expect = 9.598e-50
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VIT  W
Sbjct:  228 KPSCHNVITGGW 239          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 1.250e-49
Identity = 100/178 (56.18%), Postives = 114/178 (64.04%), Query Frame = 2
Query:  140 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT  ETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q P
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSP 250          

HSP 2 Score: 25.7942 bits (55), Expect = 1.250e-49
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH VIT  W
Sbjct:  251 KPSCHAVITGNW 262          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.769e-49
Identity = 99/190 (52.11%), Postives = 120/190 (63.16%), Query Frame = 2
Query:  119 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT  ETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ P
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSP 236          

HSP 2 Score: 23.483 bits (49), Expect = 2.769e-49
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPS H+VIT  W
Sbjct:  237 KPSSHDVITSRW 248          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.042e-48
Identity = 98/187 (52.41%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  119 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT  ETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q P
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 237          

HSP 2 Score: 24.6386 bits (52), Expect = 1.042e-48
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VI   W
Sbjct:  238 KPSCHDVIIGRW 249          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.769e-48
Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 2
Query:  170 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT  ETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q P
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 242          

HSP 2 Score: 24.6386 bits (52), Expect = 1.769e-48
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VI   W
Sbjct:  243 KPSCHDVIIGRW 254          
BLAST of FC875702 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.108e-48
Identity = 98/181 (54.14%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  137 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGRETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP 661
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT  ETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q P
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSP 234          

HSP 2 Score: 24.2534 bits (51), Expect = 5.108e-48
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  661 KPSCHEVITDEW 696
            KPSCH+VI   W
Sbjct:  235 KPSCHDVIIGAW 246          
The following BLAST results are available for this feature:
BLAST of FC875702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_BRANA5.648e-5055.09Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA7.388e-5057.06Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH9.591e-5054.49Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU9.594e-5052.97Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI9.598e-5050.54Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR1.250e-4956.18Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI5_PHAVU2.769e-4952.11Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC1.042e-4852.41Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.769e-4854.76Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC5.108e-4854.14Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31401H04EF CTVClemen1 Citrus clementina cDNA clone C31401H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875702 ID=FC875702; Name=FC875702; organism=Citrus clementina; type=EST; length=696bp
GATACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGA
GGCTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTA
GGAGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGA
TACCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGG
AGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCC
AGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCC
AGCCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTG
CCTTTTTTGCCCAAACTGGCCGTGAAACTACTGGGGGATGGCGCGATGCA
CCTGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCC
TCCGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATG
GCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGA
GAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGC
TACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCG
CACAGCCACCAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
back to top