FC875708

Overview
NameFC875708
Unique NameFC875708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10395 contig Ccv1_Contig10395:410..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_BACME (Beta-galactosidase OS=Bacillus megaterium GN=bgaM PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   24 EEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMDKIKFYGRGPFE 692
            +E  LT++ +L   T WA AG+ ++  Q  LP+K   +P V     A+ + +N   T+ ++  N   I FD + G   S+  E   ++  G  P FWRA TDND G         WR A ++  V   K  ++Q   D FV I V              +L    +L    + YT+Y  G + +E +  P+ + +P +P +G+ F +    D + +YGRGP E
Sbjct:  707 DEFVLTLSLRLSKDTAWASAGYEVAYEQFVLPAKAA-MPSVKAAHPALTVDQN-EQTLTVTGTNFTAI-FDKRKGQFISYNYERTELLASGFRPNFWRAVTDNDLGNKLHERCQTWRQASLEQHV---KKVTVQPQVD-FVIISV--------------ELALDNSLASCYVTYTLYNDGEMKIEQSLAPSET-MPEIPEIGMLFTMNAAFDSLTWYGRGPHE 907          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_THEMA (Beta-galactosidase OS=Thermotoga maritima GN=lacZ PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 59/222 (26.58%), Postives = 104/222 (46.85%), Query Frame = 3
Query:   27 EIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMDKIKFYGRGPFE 692
            E FL ++  L   T WAE GHV++  Q  L +       +    D + L+E+ G  + +  +++  + F   TG +E        ++K  + P FWR PTDND G       + W+ A  +  +F       +N                RV + S+ +L     ++     YT++G+G+V+V+ +  P   D+P +PR+G +F + +    +++YGRGP E
Sbjct:  662 EYFLEISFSLSEDTPWAEKGHVVAWEQFLLKAPAFEKKSI---SDGVSLRED-GKHLTVEAKDTVYV-FSKLTGLLEQILHRRKKILKSPVVPNFWRVPTDNDIGNRMPQRLAIWKRASKERKLFKMHWKKEEN----------------RVSVHSVFQLPGNSWVY---TTYTVFGNGDVLVDLSLIP-AEDVPEIPRIGFQFTVPEEFGTVEWYGRGPHE 858          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_VIBC3 (Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lacZ PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 65/214 (30.37%), Postives = 97/214 (45.33%), Query Frame = 3
Query:   72 WAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGES------SYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNT-SDLPPLPRVGVEFHLEQIMDKIKFYGRGPFE 692
            W+ AGH I++ Q  L  +R  LP +  T   +   +  G+ +++   N  + +F+ QTG +E W   G  V+   +   F+RA  DND G  E+      S+ +RW AAG+D L      C    VT     + VV D         +    +          Y I+G   V  E N +    SDLPPLPRVG+   L    + + ++GRGP E
Sbjct:  704 WSNAGHCIASEQWCLQPRRSMLPKI--THAPLPQWQQDGDKVRIEAANQ-QWQFNRQTGLLEQWWQNGQPVLSEPLRDNFYRAVLDNDIGTSEAQHLDPNSWIARWHAAGLDKL---RVECDDLRVTTLNESVEVVID---------VAHYHQQALALRTRWRYQIFGDARV--ELNVEVMLCSDLPPLPRVGLTLALPVAENPVSWFGRGPHE 900          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_ALTMD (Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 67/239 (28.03%), Postives = 110/239 (46.03%), Query Frame = 3
Query:   36 LTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEI--------KFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHL------EQIMDKIKFYGRGPFE 692
            L +   L N   WA+AGHVI TAQ+ L +K   +P V     A +  EN  + + +  +N+  +         F+ ++G + SW  E   ++   +   F+RAP DND G  E      +++ SRWR AGI     +  S  ++  T + V+I  +++      + + TK             YTI     + VE     + S LPP+PR+G++  +      EQ   ++ + G GPFE
Sbjct:  699 LNIDVVLANDCAWAKAGHVIDTAQLALANKSGLIPFV---STANVANENAESGVTVKAENTTLLVSVKNNVFSFNSESGLLTSWLHEDSEMLSAPLEDNFFRAPLDNDIGVSEVDNPDPNAWESRWRRAGIGKWDRICTSVDVEQST-FDVRITSLFEYHYNDKLIAATKWV-----------YTINHQAALTVEVEVLLDDS-LPPMPRIGLQAAVPAPRSNEQERMRVTWQGLGPFE 921          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_PSYIN (Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 70/236 (29.66%), Postives = 105/236 (44.49%), Query Frame = 3
Query:   27 EIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTIQLSHQNS---WEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLE-----KAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMDKIKFYGRGPFE 692
            + FL +   L     WA  G V++T QV L S  +     +    A  L E+  N I ++   S   +E++ D Q G +  W V G + + +G    F+RAP DND G  E      +++ ++W  AGI +LV      +I+ VT               +  S L K+E     + K L      YTI   G V ++ N     S L PLPR+G+E  L      + ++GRGP E
Sbjct:  700 DYFLNIEIVLNKDKPWATKGFVVATEQVALASIAQLTNVPLIESGAPRLSEDK-NKITVAGTGSGAEFELEIDKQQGVISQWLVRGENKILQGPKDNFFRAPLDNDIGTSEADCIDPNAWVTQWDTAGIANLV--PHCIAIEAVT---------------LARSVLVKVEFGHYVENKLLISSHWQYTINNQGEVQIDVNVNLAKS-LSPLPRIGLELILPDSEKPVNWFGRGPHE 916          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_VIBVU (Beta-galactosidase OS=Vibrio vulnificus GN=lacZ PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 3
Query:   27 EIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTI---QLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFH--LEQIMDKIKFYGRGPFE 692
            + +L     L+ +T WA AGHV++T Q+ L +        +RT  A  L EN G+ I    L  ++ W  ++D Q+G +  W V+G + M       F+RAP DND G  E      +++  RW  AGI         C  + +  + V +   +      D+ ++T+             +T+   G ++++ +       LPP+PR+G+E    L Q    I + G GPFE
Sbjct:  695 QYYLNTDICLIEATSWAPAGHVVATEQMALRNHAGLAMPTLRTQPAPKLTEN-GHAIVVSSLDEKHQW--RWDSQSGLLMEWNVDGKAQMLAAPQDNFFRAPLDNDIGISEVDNVDPNAWVCRWEMAGIGQWERHCVQCESETLA-HAVVVTTTFAYHFGGDVQAITQW-----------THTLSNDGEMLLDVDV-TLADALPPMPRIGLELQLPLHQADTPITWQGLGPFE 911          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_PSEHA (Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 56/236 (23.73%), Postives = 105/236 (44.49%), Query Frame = 3
Query:   27 EIFLTVTAKLMNSTRWAEAGHVISTAQVQL-PSKRERLPHVIRTGDAIILQENLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVV------YDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMD-KIKFYGRGPFE 692
            + +L +   L+N + +A A HV+ + Q +L  S            +  ++  N  ++      N++++ F+ Q+G +E W  +   V+   +   F+RAP DND G  E      +++ +RW  AGI       ++CS  N     V +R+       ++G  +     L               YT+  +G + +  +   N + LPP+PR+G+   + +  D K+ + G GPFE
Sbjct:  701 QYYLNLDVALINDSHFANANHVMDSEQFKLINSNNLNSKSFASATEKSVISVNETDSHLSIENNTFKLVFNQQSGLIEQWLQDDTQVISSPLVDNFYRAPLDNDIGVSEVDNLDPNAWEARWSRAGIGQ---WQRTCSSINAVQSSVDVRITCVFNYEFNGVLQAQTQWL---------------YTLNNTGTISLNVDVNLNDT-LPPMPRIGLSTTINKQSDTKVNWLGLGPFE 917          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_PHOPR (Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 63/225 (28.00%), Postives = 102/225 (45.33%), Query Frame = 3
Query:   54 LMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQEN----LGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMDK--IKFYGRGPFE 692
            L+++T WA+AGHV +T Q  L +        I    A  L E     L + +   HQ  W    ++++G + SW V+G S +       F+RAP DND G  E      +++  RW AAGI        SC+ ++++   VK+   +       + ++T           V  YT+   G + ++ +       LPP+PR+G+E  L    D   + + G GPFE
Sbjct:  702 LISATPWAQAGHVSATEQFTLSNTSSLTLPKISILSAPQLSEQGRDILVSNLDKKHQWQW----NVESGLLTSWMVDGQSQLLHAPEDNFFRAPLDNDIGVSEIDNIDPNAWVCRWDAAGIGRWERECVSCTSESLSQ-AVKVTSTFAYHHNGGVQAIT-----------VWTYTLDNQGEMHIDVDV-TLADHLPPMPRIGLELALPLPSDNTTVTWQGLGPFE 909          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_VIBVY (Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 61/224 (27.23%), Postives = 103/224 (45.98%), Query Frame = 3
Query:   54 LMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQENLGNTI---QLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGE------SSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLE--QIMDKIKFYGRGPFE 692
            L+ +T WA AGHV++T Q+ L +        +RT  A  L ++ G+ I    L  ++ W  ++D Q+G +  W V+G + M       F+RAP DND G  E      +++  RW  AGI         C  + +  + V +   +      D+ ++T+             +T+   G ++++ +       LPP+PR+G+E  L   Q    I + G GPFE
Sbjct:  703 LIEATSWAPAGHVVATEQMALRNHAGLAIPTLRTQPAPKLTQD-GHAIVVSSLDEKHQW--RWDSQSGLLMEWNVDGKAQMLAAPQDNFFRAPLDNDIGISEVDNVDPNAWVCRWEMAGIGQWERHCVHCDSETLA-HTVVVTTTFAYHFGGDVQAITQW-----------THTLSNDGEMLLDVDV-TLADTLPPMPRIGLELQLPLYQADTPITWQGLGPFE 910          
BLAST of FC875708 vs. ExPASy Swiss-Prot
Match: BGAL_CLOAB (Beta-galactosidase OS=Clostridium acetobutylicum GN=cbgA PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 60/224 (26.79%), Postives = 96/224 (42.86%), Query Frame = 3
Query:   24 EEIFLTVTAKLMNSTRWAEAGHVISTAQVQLPSKRERLPHVIRTGDAIILQE-NLGNTIQLSHQNSWEIKFDIQTGAVESWKVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQIMDKIKFYGRGPFE 692
            EEI LT + +L  +T WAE G+ I+  Q  +  K +   H   +   II  + N+G      H   ++  F  Q G + S +      + R     +WRA TDND+G       S+W AA +            Q   D+ V+     +   ++ +    +L    +   + I Y + G G + V   +K   S LP LP +G++F L    +   +YG GP E
Sbjct:  679 EEIVLTTSLRLAQATLWAEKGYEIAFGQKVIKEKSDMNNHNSESKMKIIHGDVNIG-----VHGKDFKAIFSKQEGGIVSLRYNNKEFITRTPKTFYWRATTDNDRGNRHEFRCSQWLAATMG-----------QKYVDFSVE-----EFDEKITLYYTYQLPTVPST-NVKITYEVSGEGIIKVNVKYK-GVSGLPELPVLGMDFKLLAEFNSFSWYGMGPEE 879          
The following BLAST results are available for this feature:
BLAST of FC875708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BGAL_BACME3.176e-1829.60Beta-galactosidase OS=Bacillus megaterium GN=bgaM ... [more]
BGAL_THEMA1.129e-1526.58Beta-galactosidase OS=Thermotoga maritima GN=lacZ ... [more]
BGAL_VIBC34.292e-1530.37Beta-galactosidase OS=Vibrio cholerae serotype O1 ... [more]
BGAL_ALTMD3.633e-1428.03Beta-galactosidase OS=Alteromonas macleodii (strai... [more]
BGAL_PSYIN1.803e-1329.66Beta-galactosidase OS=Psychromonas ingrahamii (str... [more]
BGAL_VIBVU2.355e-1327.47Beta-galactosidase OS=Vibrio vulnificus GN=lacZ PE... [more]
BGAL_PSEHA3.401e-1223.73Beta-galactosidase OS=Pseudoalteromonas haloplankt... [more]
BGAL_PHOPR3.401e-1228.00Beta-galactosidase OS=Photobacterium profundum GN=... [more]
BGAL_VIBVY7.576e-1227.23Beta-galactosidase OS=Vibrio vulnificus (strain YJ... [more]
BGAL_CLOAB1.292e-1126.79Beta-galactosidase OS=Clostridium acetobutylicum G... [more]
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Properties
Property NameValue
Genbank descriptionC31401H10EF CTVClemen1 Citrus clementina cDNA clone C31401H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875708 ID=FC875708; Name=FC875708; organism=Citrus clementina; type=EST; length=699bp
CTCAATGGAATTCATGTTCTGCTGAAGAAATATTTTTGACGGTAACTGCT
AAACTTATGAATTCTACACGTTGGGCTGAAGCTGGTCATGTTATTTCAAC
TGCTCAAGTCCAGTTACCTTCTAAAAGAGAGAGACTTCCTCATGTCATTA
GAACTGGAGATGCTATTATTCTCCAGGAAAATCTTGGTAATACGATTCAA
CTGAGTCACCAGAATAGTTGGGAGATTAAATTTGACATTCAGACTGGAGC
TGTTGAGAGCTGGAAGGTTGAGGGAGTTTCTGTGATGAAAAGAGGCATAT
TCCCATGCTTCTGGAGAGCACCTACTGATAATGACAAAGGGGGAGGGGAA
AGTAGTTATTACTCCAGGTGGAGAGCTGCAGGTATTGATAGCCTTGTTTT
TCTTACAAAGAGTTGTTCTATTCAGAATGTTACAGACTATTTTGTGAAAA
TACGAGTGGTTTATGATGGGACGCCAAGGGTTGACATGAGTTCCTTAACC
AAATTGGAAAAGGCAAAAGCTTTATTTGAAATTGTTATAGATTACACAAT
CTATGGTTCTGGAAATGTCATTGTGGAATGCAACTTCAAACCAAATACTT
CTGATCTTCCACCTTTACCACGCGTTGGAGTTGAGTTCCATTTGGAACAA
ATCATGGACAAGATTAAGTTTTACGGAAGAGGACCATTTGAATGTNATC
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