FC875710

Overview
NameFC875710
Unique NameFC875710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10299 contig Ccv1_Contig10299:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: PHLP3_DICDI (Phosducin-like protein 3 OS=Dictyostelium discoideum GN=phlp3 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 2
Query:    2 DELMDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEIGEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVI 448
            ++  DD EL K+   R+  LK+E++ +Q   +  HGE KEI E DFL EVTG++  + HFYH +F RCKI+DK L+ LA  H+GTKF+K++AE A FF  KLGI+ LP ++ F  GIA+DR VGF++ GG D F  + L + + K GV+
Sbjct:   12 EDFDDDDELAKIREQRMKQLKEESKLKQSF-LSTHGELKEIDEQDFLKEVTGTDNVVVHFYHSDFQRCKILDKSLEILAKTHLGTKFLKVNAEKAQFFTGKLGIRILPTLVFFSNGIAVDRCVGFEEFGGIDSFKIEQLAIRISKAGVL 159          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_MOUSE (Thioredoxin domain-containing protein 9 OS=Mus musculus GN=Txndc9 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.022e-34
Identity = 77/151 (50.99%), Postives = 100/151 (66.23%), Query Frame = 2
Query:    2 DELMDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEIG-EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 451
            D++ +D ELE L   R+AAL+K  +++Q    KGHGEY+EIG E DF  EV  SEK +CHFY    +RCKI+D+HL  LA KH+ TKF+KL+ E APF   +L IK +P + + R G   D +VGF DLG  DDFTT+TLE  L    VI+
Sbjct:   37 DQIGED-ELELLKEKRLAALRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCSDVIN 186          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_RAT (Thioredoxin domain-containing protein 9 OS=Rattus norvegicus GN=Txndc9 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 76/151 (50.33%), Postives = 99/151 (65.56%), Query Frame = 2
Query:    2 DELMDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEIG-EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 451
            D++ +D ELE L   R+AAL+K  +++Q    KGHGEY+EIG E DF  EV  SEK +CHFY    +RCKI+D+HL  LA KH+ TKF+K + E APF   +L IK +P + + R G   D +VGF DLG  DDFTT+TLE  L    VI+
Sbjct:   37 DQIGED-ELELLKEKRLAALRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKPNVEKAPFLCERLRIKVIPTLALLRDGKTQDYIVGFTDLGNTDDFTTETLEWRLGCSDVIN 186          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_HUMAN (Thioredoxin domain-containing protein 9 OS=Homo sapiens GN=TXNDC9 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 2
Query:   11 MDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 451
            MD+ ELE+L   R+ AL+K  +++Q    KGHGEY+EI  E DF  EV  SE  +CHFY    +RCKI+D+HL  L+ KH+ TKF+KL+ E APF   +L IK +P + + + G   D +VGF DLG  DDFTT+TLE  L    +++
Sbjct:   39 MDEDELERLKEKRLQALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILN 186          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_BOVIN (Thioredoxin domain-containing protein 9 OS=Bos taurus GN=TXNDC9 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   11 MDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLE 421
            MD+ ELE+L   R+ ALKK  +++Q    KGHGEY+EI  E DF  E   S+K +CHFY    +RCKI+D+HL  L+ KH+ TKF+KL+ E APF   +L IK +P + + + G   D +VGF DLG  DDFTT+TLE
Sbjct:   39 MDEDELERLKEKRLEALKKAQQQKQEWLSKGHGEYREIPSERDFFQEDKESKKVVCHFYRDSTFRCKILDRHLVILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLE 176          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_ARATH (Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 75/182 (41.21%), Postives = 106/182 (58.24%), Query Frame = 2
Query:    5 ELMDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVISXXXXXXXXXXXXYQENRHRTVRCSVDPDSDSD 547
            E +D+ +LE L   R+  +KK AEK++     GHGEY EI  E DF + V  SE+ +CHFY +E + CK+MDKH+  LA +HI T+F+K+ AE +PF   +L I  LP + + +     D +VGF +LGGKDDF+T+ LE  + +  VI               + R R VR S   DSDS+
Sbjct:   32 EKLDEDDLEVLRERRLKQMKKMAEKKKRWISLGHGEYSEIHSEKDFFSVVKASERVVCHFY-RENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVR-RNVRQSARSDSDSE 211          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: YERC_SCHPO (Thioredoxin domain-containing protein C2F3.12c OS=Schizosaccharomyces pombe GN=SPAC2F3.12c PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.522e-27
Identity = 59/147 (40.14%), Postives = 88/147 (59.86%), Query Frame = 2
Query:   11 MDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVI 448
            +D+ +       R+  LKKE  + +  + KGH ++  +  E + +     S+K + HFYH +F RCKI+D HL+ +A  H  TKFI+++A NAPF V KLG+K LP V+ +     +D+++GF DLG KDDF T  LE  L+K   I
Sbjct:  103 LDEFDDTAYREQRLEMLKKEFARVEAAKEKGHMQFLTVENEREVMDFTLSSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDDFETSLLEFRLLKSSAI 249          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: TXND9_CAEEL (Thioredoxin domain-containing protein 9 homolog OS=Caenorhabditis elegans GN=tag-170 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.025e-26
Identity = 58/150 (38.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:    5 ELMDDPELEKLHSDRIAALKKEAEKRQVLQMKGHGEYKEIG-EGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGGKDDFTTKTLEVLLVKKGVIS 451
            E +++ +LE +   R+  +KK  + R  +   GHG+Y+E+  E +F      S+K +C FY    +RCKI+DKH + LA KH+GT+FI ++AE   F  T+L I+ +P + I  K   +D + GF +LGGKD+FTT+T+E  L +  V++
Sbjct:   32 ENLEEDDLEVIRRQRMEQMKKAQKDRIEMLSHGHGKYEEVADEKEFFEATKKSDKVVCLFYLPGNFRCKIVDKHFEILARKHVGTRFIHVNAEKVHFLTTRLNIRVIPSIAIVVKQQTVDYIRGFDELGGKDEFTTETMENRLARSEVLT 181          
BLAST of FC875710 vs. ExPASy Swiss-Prot
Match: PLP1_YEAST (Phosducin-like protein 1 OS=Saccharomyces cerevisiae GN=PLP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 2
Query:   41 SDRIAALKKEAEKRQVLQMKGHGEYKEI-GEGDFLAEVTGSEKAICHFYHKEFYRCKIMDKHLKALAPKHIGTKFIKLDAENAPFFVTKLGIKTLPCVIIFRKGIAIDRLVGFQDLGG-KDDFTTKTLEVLLVKKGVI 448
            SD +  +KK  E        G+G  + I  E D +   T +   + HF  + F +C+ M++ L+ LA +++ T+FIK++ +  PF V KL IK LP V+ ++ G+   R VGF  LG   + F  + LE  L   GVI
Sbjct:   66 SDHLKQVKKNVED------DGYGRLQCIDNEADAIQICTKTTMVVIHFELETFGKCQYMNEKLENLAKRYLTTRFIKVNVQTCPFLVNKLNIKVLPFVVGYKNGLEKVRYVGFSKLGNDPNGFDIRRLEQSLAHSGVI 197          
The following BLAST results are available for this feature:
BLAST of FC875710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PHLP3_DICDI3.178e-3648.32Phosducin-like protein 3 OS=Dictyostelium discoide... [more]
TXND9_MOUSE1.022e-3450.99Thioredoxin domain-containing protein 9 OS=Mus mus... [more]
TXND9_RAT5.074e-3450.33Thioredoxin domain-containing protein 9 OS=Rattus ... [more]
TXND9_HUMAN8.656e-3447.30Thioredoxin domain-containing protein 9 OS=Homo sa... [more]
TXND9_BOVIN4.296e-3350.00Thioredoxin domain-containing protein 9 OS=Bos tau... [more]
TXND9_ARATH8.957e-3141.21Thioredoxin domain-containing protein 9 homolog OS... [more]
YERC_SCHPO3.522e-2740.14Thioredoxin domain-containing protein C2F3.12c OS=... [more]
TXND9_CAEEL1.025e-2638.67Thioredoxin domain-containing protein 9 homolog OS... [more]
PLP1_YEAST2.895e-1334.06Phosducin-like protein 1 OS=Saccharomyces cerevisi... [more]
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Properties
Property NameValue
Genbank descriptionC31401H12EF CTVClemen1 Citrus clementina cDNA clone C31401H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875710 ID=FC875710; Name=FC875710; organism=Citrus clementina; type=EST; length=678bp
CGATGAACTGATGGATGATCCTGAGCTGGAAAAATTGCATTCGGACAGGA
TTGCAGCTCTCAAGAAAGAAGCTGAGAAGCGACAAGTCTTGCAAATGAAA
GGACATGGAGAATACAAGGAGATAGGTGAAGGGGATTTCTTGGCTGAAGT
CACTGGAAGTGAGAAAGCGATTTGCCACTTCTACCATAAGGAGTTCTATC
GCTGCAAGATAATGGATAAACATTTGAAGGCCCTTGCACCGAAGCATATT
GGTACGAAGTTTATCAAGCTGGATGCAGAGAATGCACCCTTCTTCGTGAC
CAAACTTGGAATTAAAACTTTGCCTTGTGTCATAATATTCAGAAAAGGAA
TTGCTATAGATAGGCTGGTTGGATTTCAAGATCTGGGAGGAAAAGATGAT
TTCACCACAAAGACACTTGAGGTTCTACTAGTAAAGAAAGGTGTAATTAG
CGAGAAGAAAGAGAATGAAGATGATGAAGAGGATGAATATCAGGAGAATA
GGCACAGGACGGTGAGATGCTCTGTGGATCCAGACTCTGATTCTGACTGA
CGTGAAATCTGAAAATGAAAATGTGGTTTCTTTCCTGGAATGTCAGTTGA
CTTAATAAATGTGAGCTTGTATAACTATTTTCACATTTAANGTTTTTCTA
TTGTCCCAAGAAATCATTTTTGTGATTA
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