FC876187

Overview
NameFC876187
Unique NameFC876187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876187_ssr8 microsatellite FC876187_ssr8:8..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS1_LUPAL (Farnesyl pyrophosphate synthetase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.663e-100
Identity = 176/205 (85.85%), Postives = 185/205 (90.24%), Query Frame = 2
Query:  116 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            M+DL+S F+ VY VLK ELL+DPAFEF  DSRQW+DRMLDYNVPGGKLNRGLSV+DSYRLLK+G EL DDE FL+SALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFRVPKVGMIAANDGVLLRNHI RILK HFR KPYY DLLDLFNEVEFQTASGQMIDLITT+EGEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    1 MADLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRMLDYNVPGGKLNRGLSVIDSYRLLKDGHELNDDEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWFRVPKVGMIAANDGVLLRNHIPRILKKHFRGKPYYADLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_HELAN (Farnesyl pyrophosphate synthetase OS=Helianthus annuus GN=FPS1 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.107e-98
Identity = 174/204 (85.29%), Postives = 186/204 (91.18%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            SDLKS+F+ VY  LK ELLNDPAFEF HDSRQW+D+MLDYNVPGGKLNRGLSVVDSY+LLK G ELTDDE FL+SALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    3 SDLKSKFLHVYQTLKSELLNDPAFEFHHDSRQWIDKMLDYNVPGGKLNRGLSVVDSYQLLK-GAELTDDEIFLASALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRLPKVGMIAANDGLILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS2_LUPAL (Farnesyl pyrophosphate synthetase 2 OS=Lupinus albus GN=FPS2 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.087e-97
Identity = 171/205 (83.41%), Postives = 183/205 (89.27%), Query Frame = 2
Query:  116 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            M+D KS F+ VY +LK ELL DPAFEF  DSRQWV+RMLDYNVPGGKLNRGLSV+DSY+LLK+G+EL D+E FL+SALGWCIEWLQAYFLVLDDIMD SHTRRG PCWFRVPKVGMIA NDGV+LRNHI RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+EGEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    1 MADPKSSFLNVYSILKSELLQDPAFEFSTDSRQWVERMLDYNVPGGKLNRGLSVIDSYKLLKDGQELNDEEIFLASALGWCIEWLQAYFLVLDDIMDNSHTRRGHPCWFRVPKVGMIAPNDGVVLRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLEGEKDLSKYTLSLHRRIVQYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_ARTAN (Farnesyl pyrophosphate synthetase OS=Artemisia annua GN=FPS1 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.072e-97
Identity = 171/204 (83.82%), Postives = 186/204 (91.18%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            +DLKS+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSVVDSY+LLK G EL+DDE FLSSALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG+LLRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    4 TDLKSKFLKVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVVDSYQLLKGG-ELSDDEIFLSSALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGILLRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALL 206          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS1_PARAR (Farnesyl pyrophosphate synthetase 1 OS=Parthenium argentatum GN=FPS1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.013e-96
Identity = 170/204 (83.33%), Postives = 186/204 (91.18%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            SDLKSRF++VY  LK EL+NDPAFEFD DSRQWV++MLDYNVPGGKLNRGLSV+DSY+LLK G ELTD+E FL++ALGWCIEWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRN++ RILK HFR KPYYVDLLDLFNEVEFQTASGQMIDLITT+ GEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    3 SDLKSRFLQVYDTLKSELINDPAFEFDDDSRQWVEKMLDYNVPGGKLNRGLSVIDSYQLLKGG-ELTDNEIFLAAALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNNVPRILKKHFRGKPYYVDLLDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS2_PARAR (Farnesyl pyrophosphate synthetase 2 OS=Parthenium argentatum GN=FPS2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.551e-95
Identity = 165/204 (80.88%), Postives = 185/204 (90.69%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            +D++S+F++VY  LK EL+NDPAFEFD DSRQW+++MLDYNVPGGKLNRGLSV+DSY+LLK GK LTDDE F +SALGWC+EWLQAYFLVLDDIMD SHTRRGQPCWFR+PKVGMIAANDG++LRNH+ RILK HFR KPYYVDL+DLFNEVEFQTASGQMIDLITT+ GEKDLS      HRRIVQYKTAYYSFYLPVACALL
Sbjct:    3 TDIRSKFLQVYDTLKSELINDPAFEFDDDSRQWIEKMLDYNVPGGKLNRGLSVIDSYQLLKGGK-LTDDEIFHASALGWCVEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAANDGIILRNHVPRILKKHFRGKPYYVDLVDLFNEVEFQTASGQMIDLITTLVGEKDLSKYSLSIHRRIVQYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS2_ARATH (Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=FPS2 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 9.073e-93
Identity = 163/205 (79.51%), Postives = 181/205 (88.29%), Query Frame = 2
Query:  116 MSDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            M+DLKS F++VY VLK +LL DP+FEF H+SRQW++RMLDYNV GGKLNRGLSVVDSY+LLK+G++LT+ E FLS ALGWCIEWLQAYFLVLDDIMD S TRRGQPCWFR PKVGMIA NDG+LLRNHI RILK HFR+ PYYVDL+DLFNEVEFQTA GQMIDLITT +GEKDLS      HRRIV+YKTAYYSFYLPVACALL
Sbjct:    1 MADLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSLQIHRRIVEYKTAYYSFYLPVACALL 205          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS1_ARATH (Farnesyl pyrophosphate synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=FPS1 PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 7.681e-92
Identity = 163/204 (79.90%), Postives = 179/204 (87.75%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKD-----LSNHRRIVQYKTAYYSFYLPVACALL 715
            +DLKS F+ VY VLK +LL+DP+FEF ++SR WVDRMLDYNV GGKLNRGLSVVDS++LLK+G +LT+ E FLS ALGWCIEWLQAYFLVLDDIMD S TRRGQPCWFRVP+VGM+A NDG+LLRNHI RILK HFRDKPYYVDL+DLFNEVE QTA GQMIDLITT EGEKD     LS HRRIVQYKTAYYSFYLPVACALL
Sbjct:   44 TDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSLSIHRRIVQYKTAYYSFYLPVACALL 247          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_MAIZE (Farnesyl pyrophosphate synthetase OS=Zea mays GN=FPS PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 8.225e-86
Identity = 150/203 (73.89%), Postives = 172/203 (84.73%), Query Frame = 2
Query:  122 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACALL 715
            D ++ F  +Y  LK+ELL DPAFEF  +SRQW+DRM+DYNV GGK NRGLSVVDSY+LLK    L ++E FL+  LGWCIEWLQA+FLVLDDIMD SHTRRGQPCWFRVP+VG+IAANDG++LRNHISRIL+ HF+ KPYY DLLDLFNEVEF+TASGQ++DLITT EGEKDL+      H RIVQYKTAYYSFYLPVACALL
Sbjct:   11 DTRAAFARIYKTLKEELLTDPAFEFTEESRQWIDRMVDYNVLGGKCNRGLSVVDSYKLLKGADALGEEETFLACTLGWCIEWLQAFFLVLDDIMDDSHTRRGQPCWFRVPQVGLIAANDGIILRNHISRILRRHFKGKPYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLTKYNITVHGRIVQYKTAYYSFYLPVACALL 213          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: CPPAS_TANCI (Chrysanthemyl diphosphate synthase, chloroplastic OS=Tanacetum cinerariifolium PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.477e-82
Identity = 146/204 (71.57%), Postives = 173/204 (84.80%), Query Frame = 2
Query:  119 SDLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSNH-----RRIVQYKTAYYSFYLPVACALL 715
            S+L S+F++VY  LK EL++DP+FEFD DSRQWV+RM+DYNVPGGK+ RG SVVDSY+LLK G+ELT+DE FL+ ALGWC EWLQA+ LVLDDIMDGSHTRRGQPCWFR+P+VG++A NDGVLLRNH+ RILK +F+ KPYYV LLDLFNE EFQT SGQMID I  + G+KDLS +     RRIVQYK +YYS YLP+ACALL
Sbjct:   56 SNLDSQFMQVYETLKSELIHDPSFEFDDDSRQWVERMIDYNVPGGKMVRGYSVVDSYQLLK-GEELTEDEAFLACALGWCTEWLQAFILVLDDIMDGSHTRRGQPCWFRLPEVGVVAINDGVLLRNHVHRILKKYFQGKPYYVHLLDLFNETEFQTISGQMIDTICRLAGQKDLSKYTMTLNRRIVQYKGSYYSCYLPIACALL 258          
The following BLAST results are available for this feature:
BLAST of FC876187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS1_LUPAL7.663e-10085.85Farnesyl pyrophosphate synthetase 1 OS=Lupinus alb... [more]
FPPS_HELAN1.107e-9885.29Farnesyl pyrophosphate synthetase OS=Helianthus an... [more]
FPPS2_LUPAL2.087e-9783.41Farnesyl pyrophosphate synthetase 2 OS=Lupinus alb... [more]
FPPS_ARTAN6.072e-9783.82Farnesyl pyrophosphate synthetase OS=Artemisia ann... [more]
FPPS1_PARAR3.013e-9683.33Farnesyl pyrophosphate synthetase 1 OS=Parthenium ... [more]
FPPS2_PARAR2.551e-9580.88Farnesyl pyrophosphate synthetase 2 OS=Parthenium ... [more]
FPPS2_ARATH9.073e-9379.51Farnesyl pyrophosphate synthetase 2 OS=Arabidopsis... [more]
FPPS1_ARATH7.681e-9279.90Farnesyl pyrophosphate synthetase 1, mitochondrial... [more]
FPPS_MAIZE8.225e-8673.89Farnesyl pyrophosphate synthetase OS=Zea mays GN=F... [more]
CPPAS_TANCI2.477e-8271.57Chrysanthemyl diphosphate synthase, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D07EF DevOvary1 Citrus clementina cDNA clone C32001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876187 ID=FC876187; Name=FC876187; organism=Citrus clementina; type=EST; length=717bp
GAAACAACTCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATT
CTGTTTCTCTCTTTTTTTTCTTACTTTTTTTTTTGGTGGTGGGTCGCAAA
AGCGGAAGGTAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTA
TGGCGTTTTAAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGACC
ACGATTCTCGCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGA
GGAAAGCTGAACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAA
AGAAGGAAAAGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAG
GCTGGTGCATCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATC
ATGGATGGCTCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCC
CAAGGTTGGTATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATA
TCTCCAGAATTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGAC
CTGTTGGATTTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAAT
GATAGACTTAATTACCACAATCGAAGGAGAGAAAGATCTATCGAATCATC
GTCGCATTGTTCAGTACAAAACTGCTTACTATTCATTTTACCTTCCAGTT
GCTTGTGCATTACTTAT
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