FC876192

Overview
NameFC876192
Unique NameFC876192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876192_ssr380 microsatellite FC876192_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10793 contig Ccv1_Contig10793:818..1511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876192 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 82/229 (35.81%), Postives = 96/229 (41.92%), Query Frame = 3
Query:    3 RRAALDKDAQMKQANGXXXXXXXXXXISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXXXXXXXXXXXXRLWNDIYTITYQRADSPADRMS 689
            +RA LDKD QMK A+G          ISP                               P+C  DKVHDVKL DS +D     + S  Q NP                 D   GNSY                                  L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+R            R +NDIYTI YQR DS  +R+S
Sbjct: 1058 KRAVLDKDTQMKPASGDSSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDVLDDSL-PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLS 1282          
The following BLAST results are available for this feature:
BLAST of FC876192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL3_ARATH7.672e-2535.81E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC32001E02EF DevOvary1 Citrus clementina cDNA clone C32001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876192 ID=FC876192; Name=FC876192; organism=Citrus clementina; type=EST; length=694bp
GTAGAAGAGCAGCTCTAGATAAAGATGCACAAATGAAGCAAGCGAATGGA
GATTCTAGTTCTGAGGATGAAGAACTGGATATTTCTCCTGTGGAGATTGA
TGATGCATTGGTAATTGAGGATGATGACATCTCAGATGATGAAGATGATG
ATCATGAAGATGTGCTAAAAGATGATTCTCTTCCTCTCTGCCTGTCTGAC
AAAGTGCATGATGTGAAATTGGGAGATTCAGCTGAGGATAGTACCACTGT
TCCATCGGCCAGTGATAGCCAGAATAATCCAGCTTCTGGATCCAGTAGCA
GGGGTGCTACAGGTAGGGGTTCTGATTCTACTGATTTTAGGGGTGGCAAT
TCTTATGGTTCAAGGGGTGCAATGTCTTTTGCTGCTGCTGCAATGGCTGG
GCTTGGTTCTGCAAATGGCAGAGGTGTCCGGGGAGGCAGAGATCGGCATG
GACGTCCTCTATTTGGTAGCTCCAATGAGCCCCCAAAGTTAATTTTCACT
GTTGGTGGGAAACAGCTTAACAGGCATCTGACTATTTATCAGGCCATCCA
GCGACAGCTTGTGCTGGATGAGGATGAGGATGAGAGGTTTGGTGGCAGTG
ATTTCATATCTAGTGATGGAAGCAGGCTGTGGAATGATATTTACACNATT
ACATATCAGAGGGCAGACAGCCCAGCTGATAGAATGTCTGCTGG
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