FC876208

Overview
NameFC876208
Unique NameFC876208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876208_ssr380 microsatellite FC876208_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10793 contig Ccv1_Contig10793:818..1514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876208 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 83/231 (35.93%), Postives = 97/231 (41.99%), Query Frame = 3 
Query:    3 RRAALDKDAQMKQANGXXXXXXXXXXISPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLDEDEDERXXXXXXXXXXXXRLWNDIYTITYQRADSPADRMSAG 695
            +RA LDKD QMK A+G          ISP                               P+C  DKVHDVKL DS +D     + S  Q NP                 D   GNSY                                  L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+LDED+D+R            R +NDIYTI YQR DS  +R+S G
Sbjct: 1058 KRAVLDKDTQMKPASGDSSSEDEELEISPVDIDDALVIEEDDISDDEDDDNEDVLDDSL-PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVG 1284
The following BLAST results are available for this feature:
BLAST of FC876208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL3_ARATH1.559e-2535.93E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC32001G01EF DevOvary1 Citrus clementina cDNA clone C32001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876208 ID=FC876208; Name=FC876208; organism=Citrus clementina; type=EST; length=697bp
GTAGAAGAGCAGCTCTAGATAAAGATGCACAAATGAAGCAAGCGAATGGA
GATTCTAGTTCTGAGGATGAAGAACTGGATATTTCTCCTGTGGAGATTGA
TGATGCATTGGTAATTGAGGATGATGACATCTCAGATGATGAAGATGATG
ATCATGAAGATGTGCTAAAAGATGATTCTCTTCCTCTCTGCCTGTCTGAC
AAAGTGCATGATGTGAAATTGGGAGATTCAGCTGAGGATAGTACCACTGT
TCCATCGGCCAGTGATAGCCAGAATAATCCAGCTTCTGGATCCAGTAGCA
GGGGTGCTACAGGTAGGGGTTCTGATTCTACTGATTTTAGGGGTGGCAAT
TCTTATGGTTCAAGGGGTGCAATGTCTTTTGCTGCTGCTGCAATGGCTGG
GCTTGGTTCTGCAAATGGCAGAGGTGTCCGGGGAGGCAGAGATCGGCATG
GACGTCCTCTATTTGGTAGCTCCAATGAGCCCCCAAAGTTAATTTTCACT
GTTGGTGGGAAACAGCTTAACAGGCATCTGACTATTTATCAGGCCATCCA
GCGACAGCTTGTGCTGGATGAGGATGAGGATGAGAGGTTTGGTGGCAGTG
ATTTCATATCTAGTGATGGAAGCAGGCTGTGGAATGATATTTACACAATT
ACATATCAGAGGGCAGACAGCCCAGCTGATAGAATGTCTGCTGGGGG
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