FC876231

Overview
NameFC876231
Unique NameFC876231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876231_ssr137 microsatellite FC876231_ssr137:137..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5477 contig Ccv1_Contig5477:16..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BZR1_ARATH (Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.896e-33
Identity = 72/106 (67.92%), Postives = 78/106 (73.58%), Query Frame = 3
Query:   60 MTSDGATSTSAA---------RRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVT 350
            MTSDGATSTSAA         RRKP+W              A+AAKIYTGLRAQG+YNLPKHCDNNEVLKALC EAGWVVEEDGTTYRKG +P P +IA TS+RVT
Sbjct:    1 MTSDGATSTSAAAAAAAAAAARRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDNNEVLKALCVEAGWVVEEDGTTYRKGCKPLPGEIAGTSSRVT 106          
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BZR2_ARATH (Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis thaliana GN=BZR2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.782e-33
Identity = 71/105 (67.62%), Postives = 78/105 (74.29%), Query Frame = 3
Query:   60 MTSDGATSTSAA--------RRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVT 350
            MTSDGATSTSAA        RRKP+W              A+AAKIYTGLRAQGNYNLPKHCDNNEVLKALC+EAGWVVEEDGTTYRKG +P P D+A +S+R T
Sbjct:    1 MTSDGATSTSAAAAAAAMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPLPGDMAGSSSRAT 105          
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BEH1_ARATH (BES1/BZR1 homolog protein 1 OS=Arabidopsis thaliana GN=BEH1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.908e-27
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   60 MTSDGATSTSAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVT 350
            MT+ G  ST+A  R PTW              AIAAKI+TGLR+QGNY LPKHCDNNEVLKALC EAGW+V EDGTTYRKG+RP    +  +S +++
Sbjct:    1 MTASGGGSTAATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPTETTVPCSSIQLS 97          
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BEH2_ARATH (BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.975e-26
Identity = 54/88 (61.36%), Postives = 61/88 (69.32%), Query Frame = 3
Query:   72 GATSTSAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIAST 335
            G    S++ R PTW              AI AKIY+GLRAQGNY LPKHCDNNEVLKALC EAGW+VE+DGTTYRKG +PP  DI+ T
Sbjct:    7 GGGGGSSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPPASDISGT 94          
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BEH4_ARATH (BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.337e-21
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   87 SAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPP 314
            ++  R PTW              AIAAKI+TGLR  GNY LPKHCDNNEVLKALC EAGW+VE DGTTYRKG   P
Sbjct:    2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCSRP 77          
BLAST of FC876231 vs. ExPASy Swiss-Prot
Match: BEH3_ARATH (BES1/BZR1 homolog protein 3 OS=Arabidopsis thaliana GN=BEH3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 9.662e-21
Identity = 45/75 (60.00%), Postives = 51/75 (68.00%), Query Frame = 3
Query:   87 SAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRP 311
            ++  R PTW              AIAAKI+ GLR  GN+ LPKHCDNNEVLKALC EAGW VE+DGTTYRKG +P
Sbjct:    2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKP 76          
The following BLAST results are available for this feature:
BLAST of FC876231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BZR1_ARATH2.896e-3367.92Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis th... [more]
BZR2_ARATH3.782e-3367.62Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis th... [more]
BEH1_ARATH6.908e-2757.73BES1/BZR1 homolog protein 1 OS=Arabidopsis thalian... [more]
BEH2_ARATH9.975e-2661.36BES1/BZR1 homolog protein 2 OS=Arabidopsis thalian... [more]
BEH4_ARATH4.337e-2161.84BES1/BZR1 homolog protein 4 OS=Arabidopsis thalian... [more]
BEH3_ARATH9.662e-2160.00BES1/BZR1 homolog protein 3 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32002A12EF DevOvary1 Citrus clementina cDNA clone C32002A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876231 ID=FC876231; Name=FC876231; organism=Citrus clementina; type=EST; length=449bp
GTATTCCTCGTGGCCATTTTAGCCTTTTAGGTCTAGAGAGAGGCGGGCTT
CGTCGGAAAATGACGTCAGACGGTGCCACATCGACGTCGGCAGCTCGGAG
GAAGCCGACGTGGAGGGAGAGGGAGAACAATAGGAGGAGAGAGAGAAGGA
GAAGAGCTATAGCCGCTAAGATTTACACTGGGTTGAGGGCTCAGGGAAAC
TATAATTTGCCCAAGCACTGTGATAATAATGAAGTTTTGAAAGCTCTATG
TGCAGAAGCTGGCTGGGTTGTTGAGGAAGACGGCACCACTTATCGCAAAG
GAACGAGGCCTCCTCCTATTGATATAGCAAGTACTTCAGCCAGAGTTACC
CCTTACTCTTCCCAGAATCCAAGTCCTTTATCTTCATCCTTTCCGAGCCC
AGTTCCATCATATCCGACTAGTCCTACTCGTGGTGATGCCAACAACCCA
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