FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:145..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 3.188e-61
Identity = 116/139 (83.45%), Postives = 125/139 (89.93%), Query Frame = 1
Query:   73 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAG
Sbjct:    2 QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAG 139          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.164e-61
Identity = 117/139 (84.17%), Postives = 125/139 (89.93%), Query Frame = 1
Query:   73 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPAGVPRKPGMTRDDLF INAG
Sbjct:    2 QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAG 139          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.750e-59
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 1
Query:   91 NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMTRDDLFNINAG
Sbjct:    4 NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAG 137          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = 1
Query:   88 ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRKPGMTRDDLF INAG
Sbjct:    7 ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAG 137          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.533e-55
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 1
Query:   88 ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            AN+RIA I+AHL P  T Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPRKPGMTRDDLF INAG
Sbjct:    7 ANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAG 141          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 2.002e-55
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 1
Query:   73 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            +  SGA+ RI+RIA HL P       +   L R DCRAKGG  GFKVA+LGAAGGIGQPLAMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPAGVPRKPGMTRDDLFNINAG
Sbjct:    2 EANSGASDRISRIAGHLRPQ----REDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAG 136          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 7.607e-55
Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 1
Query:   73 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            +  + A +R+ R+A+HL PP  Q+E ES  L   +CRAKG +PGFKVA+LGA+GGIGQPLA+LMK+NPLVSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMTRDDLFNINAG
Sbjct:    2 EDAAAAARRMERLASHLRPPASQME-ESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAG 139          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.098e-53
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 1
Query:   88 ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            A +RIA I+AHL P  T Q+E ++S +G   CRAKGG+PGFKVA+LGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPRKPGMTRDDLF INAG
Sbjct:    7 AYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAG 141          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.908e-36
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1
Query:  199 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAG
Sbjct:   25 PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 70/97 (72.16%), Postives = 82/97 (84.54%), Query Frame = 1
Query:  199 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAG
Sbjct:   33 PERKVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTRDDLFNINAG 129          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDHG_CITLA3.188e-6183.45Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA4.164e-6184.17Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG2_ARATH1.750e-5984.33Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
MDHG1_ARATH5.268e-5679.10Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_BRANA1.533e-5578.52Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG_SOYBN2.002e-5578.42Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG_ORYSJ7.607e-5576.26Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHG1_BRANA1.098e-5377.04Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHM_FRAAN7.908e-3673.20Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_EUCGU6.695e-3572.16Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]

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Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
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