FC876249

Overview
NameFC876249
Unique NameFC876249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9479 contig Ccv1_Contig9479:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876249 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.499e-24
Identity = 77/206 (37.38%), Postives = 94/206 (45.63%), Query Frame = 2 
Query:  122 VASHADISPELYWKTVLPNSPMPKAVKDLLQPDVLEDKSTSVNVGKGGVN----------------------VDAGKXXXXXXXXXXXXXXXXXXXXXXXD-----KRXXXXXXXXXXXXXXXXXXXPVYVGV----SPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTS--NGAT-FLSRQAAKSTPFSSDKLPE 637
            VA  AD++PE YW T LPN+P+P ++ +LL  D  ++KST+V VGKGGVN                      VD GK                             KR                   P+YVGV    +PF Y YAA E QLHDDPN ALFFLEKDL  G +MN+ F       G T FL R  A++ PF S+K  E
Sbjct:   17 VAIAADLTPERYWSTALPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGGVNVNTHKGKTGSGTAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKRTDVGVGKGGVTVHTRHKGRPIYVGVKPGANPFVYNYAAKETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSE 222
[Close]
BLAST of FC876249 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 48/75 (64.00%), Postives = 56/75 (74.67%), Query Frame = 2 
Query:  422 PVYVGVSPFNYVYAANENQLHDDPNTALFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFN 646
            PV+V V+PF Y YAA E QLHDDPN ALFFLEKDLHPG  M +HFT T+ G  FL R  A + PFSS+K+PEI +
Sbjct:  185 PVHVNVAPFIYNYAATETQLHDDPNVALFFLEKDLHPGKTMAVHFTATTAGEKFLPRSEADAMPFSSEKVPEILS 259
The following BLAST results are available for this feature:
BLAST of FC876249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RD22_ARATH7.499e-2437.38Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP3_ORYSJ2.667e-2164.00BURP domain-containing protein 3 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC32002D04EF DevOvary1 Citrus clementina cDNA clone C32002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876249 ID=FC876249; Name=FC876249; organism=Citrus clementina; type=EST; length=648bp
GATGAAAGCCTAGATTTTAGATTACATACTATCTTGTATTCTGGGTGTCT
TTTAAAACATACTCAAAGCTATAATGGAGTTTCACTTGTTGCCCATCCTT
GCTTTCCTCAGTCTAGCACTGGTAGCAAGTCATGCTGACATTTCTCCTGA
GCTTTACTGGAAAACTGTACTGCCAAATTCCCCGATGCCAAAAGCTGTCA
AAGATCTTCTACAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTCAAC
GTAGGGAAGGGTGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGGTGG
TGGCACCCATGTGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTGGAA
AGCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTA
AGTACAGGACACAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATTCAA
CTATGTATATGCTGCAAATGAGAACCAACTCCATGATGACCCGAATACAG
CTCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGCATGAAGATGAACTTG
CACTTCACTCAAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGC
CAAATCAACTCCTTTCTCGTCTGACAAATTGCCTGAGATCTTTAACCA
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