FC876254
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 3.170e-54 Identity = 117/154 (75.97%), Postives = 125/154 (81.17%), Query Frame = 2 Query: 35 VQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFS-DKHMYDASQRGNGT----------SAKMRVARLVDGYLTEVARDRN 460 + KDQRMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLLIP Y +KGET+YDVDLVQRLLEHFLVQEQTE SSPSR S S + MY RGN +AKMRVARLVD YLTEVARDRN Sbjct: 367 ISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDSYLTEVARDRN 520
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.058e-41 Identity = 100/173 (57.80%), Postives = 118/173 (68.21%), Query Frame = 2 Query: 11 GMKDD---PPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS--KGETLYDVDLVQRLLEHFLVQEQTE---SSSP---------------SRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460 G KDD + +++QRM++ES+ISI PPQ+DSVSC FLLRLLR+A ML+ APALVTELEKRVGMQ EQA LADLLIP+Y +T YDVDLVQRL+EHFLVQEQTE +SSP R S AS G +AK RVARL+D YL+EV+RDRN Sbjct: 351 GGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYGGRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGGLNAKARVARLLDSYLSEVSRDRN 523
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20 Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = 2 Query: 44 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKG-ETLYDVDLVQRLLEHFLVQEQTES---SSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460 ++Q+ ++E + ++ QK V F + +LR+A +LK +P + LEKR+GMQ +QA L DL++P++S ETLYDVD VQR+L+HFL +Q SP S D ++ + Q +A VA+L+DGYL EVA D N Sbjct: 286 EEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLYDVDSVQRILDHFLGTDQIMPGGVGSPC-SSVDDGNLIGSPQSITPMTA---VAKLIDGYLAEVAPDVN 424
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17 Identity = 52/144 (36.11%), Postives = 86/144 (59.72%), Query Frame = 2 Query: 32 TVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY-SKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRN 460 T +++ ++ I+E++++++P + V SFL LLR A +L + + +LE+R+G Q + ATL DLLIP++ G+TL+D+D V R+L +F Q+ + S F + SQ +A +VA+LVD YL E+A D N Sbjct: 263 TKRSEHEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNF-SQQGGDDSEDEESVFECDSPHSPSQ-----TAMFKVAKLVDSYLAEIAPDAN 400
BLAST of FC876254 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 3.921e-12 Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 23 DPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVA 448 D + + QR +++S++S++P K +FL LLR A L + ELEKR+ + E ++ DLLIP+++ GE L D+D V+R++ F+ +E+ RG + + RVA+ VD YL E+A Sbjct: 249 DNESDERSQQRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNGGD----------FNRGVCSVSLQRVAKTVDSYLAEIA 381 The following BLAST results are available for this feature:
BLAST of FC876254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876254 ID=FC876254; Name=FC876254; organism=Citrus clementina; type=EST; length=462bpback to top |