FC876255

Overview
NameFC876255
Unique NameFC876255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1230 contig Ccv1_Contig1230:302..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876255 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.340e-51
Identity = 113/148 (76.35%), Postives = 120/148 (81.08%), Query Frame = 2
Query:    2 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAY-SKRETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFS-DKHMYDASQRGNGT----------SAKMRVARLVDGYLTEVAR 409
            KDQRMI+ESLISIIPPQKDSV+CSFLLRLLR ANMLKVAPAL+TELEKRVGMQFEQATL DLLIP Y +K ET+YDVDLVQRLLEHFLVQEQTE SSPSR S S  + MY    RGN            +AKMRVARLVD YLTEVAR
Sbjct:  370 KDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGMQFEQATLQDLLIPGYNNKGETMYDVDLVQRLLEHFLVQEQTEGSSPSRMSPSPSQSMYADIPRGNNNNGGGGGGNNQNAKMRVARLVDSYLTEVAR 517          
BLAST of FC876255 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.910e-40
Identity = 94/156 (60.26%), Postives = 110/156 (70.51%), Query Frame = 2
Query:    2 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKR--ETLYDVDLVQRLLEHFLVQEQTE---SSSP---------------SRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVAR 409
            ++QRM++ES+ISI PPQ+DSVSC FLLRLLR+A ML+ APALVTELEKRVGMQ EQA LADLLIP+Y  R  +T YDVDLVQRL+EHFLVQEQTE   +SSP                R   S      AS    G +AK RVARL+D YL+EV+R
Sbjct:  365 REQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQAALADLLIPSYGGRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGGLNAKARVARLLDSYLSEVSR 520          
BLAST of FC876255 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.872e-20
Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 2
Query:    2 KDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KRETLYDVDLVQRLLEHFLVQEQTES---SSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVA 406
            ++Q+ ++E +  ++  QK  V   F + +LR+A +LK +P  +  LEKR+GMQ +QA L DL++P++S   ETLYDVD VQR+L+HFL  +Q       SP   S  D ++  + Q     +A   VA+L+DGYL EVA
Sbjct:  286 EEQKNLLEEIQELLRMQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSHTMETLYDVDSVQRILDHFLGTDQIMPGGVGSPC-SSVDDGNLIGSPQSITPMTA---VAKLIDGYLAEVA 420          
BLAST of FC876255 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.579e-15
Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = 2
Query:    8 QRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYSKR-ETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVA 406
            ++ I+E++++++P +   V  SFL  LLR A +L  + +   +LE+R+G Q + ATL DLLIP++    +TL+D+D V R+L +F  Q+  + S      F     +  SQ     +A  +VA+LVD YL E+A
Sbjct:  269 EQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDTSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNF-SQQGGDDSEDEESVFECDSPHSPSQ-----TAMFKVAKLVDSYLAEIA 396          
BLAST of FC876255 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 2
Query:    8 QRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPAYS-KRETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVA 406
            QR +++S++S++P  K     +FL  LLR A  L  +     ELEKR+ +  E  ++ DLLIP+++   E L D+D V+R++  F+ +E+                     RG  + +  RVA+ VD YL E+A
Sbjct:  258 QRDLVQSIVSLLPSDKGLFPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSFTYDGERLLDLDSVRRIISAFVEKEKNVGVFNGGD----------FNRGVCSVSLQRVAKTVDSYLAEIA 381          
The following BLAST results are available for this feature:
BLAST of FC876255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPT3_ARATH3.340e-5176.35Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ5.910e-4060.26Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH8.872e-2041.01BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH6.579e-1535.82BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH4.413e-1132.09Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32002D12EF DevOvary1 Citrus clementina cDNA clone C32002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876255 ID=FC876255; Name=FC876255; organism=Citrus clementina; type=EST; length=409bp
TAAAGATCAACGGATGATAATCGAGAGCCTTATCAGCATAATTCCACCAC
AGAAAGACAGTGTGTCATGTAGCTTCCTTCTTAGGCTCTTGAGAATGGCA
AACATGTTAAAAGTAGCACCTGCTTTGGTGACTGAATTGGAGAAACGAGT
GGGGATGCAGTTTGAGCAAGCTACATTGGCAGATCTTCTCATTCCTGCTT
ACAGTAAACGTGAAACTCTATATGATGTGGATCTTGTTCAGAGGCTTTTG
GAGCATTTTCTTGTTCAGGAGCAGACCGAAAGTTCGAGTCCTAGTAGGCA
ATCTTTTTCAGATAAACACATGTATGACGCAAGTCAAAGAGGAAATGGCA
CAAGTGCTAAGATGAGAGTGGCAAGGCTTGTTGATGGTTATCTTACAGAA
GTGGCCAGA
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