FC876259

Overview
NameFC876259
Unique NameFC876259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length524
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876259 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.444e-44
Identity = 97/146 (66.44%), Postives = 110/146 (75.34%), Query Frame = 2
Query:   86 MVNFGGNKVGQVVAGIGGNGVGQVLAAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSG 523
            M  FGG  +  VV+GIGGNGVG  LAAVA +LL RLF GPG AL+ +D++    +D+  +  +  GD        + PVTIR +NITCSLSDKSSKSVRFLL NVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL  SPRLHLSG
Sbjct:    1 MAPFGGKSLADVVSGIGGNGVGGALAAVAAALLVRLFAGPGIALLPEDEA----EDDYAETEDGGGDS-------IRPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSG 135          
BLAST of FC876259 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  161 AAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIR*QNITCSLSDK--SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQ 490
            A++ +S  F  FT P   ++  +  +  +DD   D+  A            FP+ ++  +IT  ++ K  +S S + +LN +SG A PG LLA+MGPSGSGKTTLLN L G+
Sbjct:   92 ASLGLSFSFTGFTVPHEEIIASERCS--NDDILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGR 201          
The following BLAST results are available for this feature:
BLAST of FC876259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AB7G_ARATH2.444e-4466.44ABC transporter G family member 7 OS=Arabidopsis t... [more]
AB27G_ARATH2.088e-1137.50ABC transporter G family member 27 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC32002E07EF DevOvary1 Citrus clementina cDNA clone C32002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876259 ID=FC876259; Name=FC876259; organism=Citrus clementina; type=EST; length=524bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCC
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