FC876260

Overview
NameFC876260
Unique NameFC876260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876260_ssr98 microsatellite FC876260_ssr98:98..109. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876260_ssr152 microsatellite FC876260_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876260 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.429e-17
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  303 DLF-WDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILS 512
            D+F WDD+E+LSLI KE + N    + I D  L+  RKE ++WVLRVK+H+GFT+LTAILAVNYFDRF+ S
Sbjct:   60 DMFLWDDDEILSLISKENETNPCFGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTS 130          
BLAST of FC876260 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.230e-17
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  246 ETERCEEKESPLPPV---LQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILS 512
            + + C+E     P +   L +HD+ WDD+EL +LI K+  E  +  + + DE L+L R++ ++W+ +VK+H+GF +LTA+LAVNYFDRFI S
Sbjct:   31 QVDLCDESVEKFPFLNLGLSDHDMLWDDDELSTLISKQ--EPCLYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITS 120          
BLAST of FC876260 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.552e-14
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  240 DAETERCEEKES----PLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSH 515
            D E E  EE  S      P V+ + DLFW+D +L++L  KE+++     D   D  L   RKE V W+LRV AH+GF+ L A+LA+ Y D+FI S+
Sbjct:   30 DDEGEEVEENSSLSSSSSPFVVLQQDLFWEDEDLVTLFSKEEEQGLSCLD---DVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSY 122          
The following BLAST results are available for this feature:
BLAST of FC876260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCD32_ARATH2.429e-1760.56Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD33_ARATH9.230e-1743.48Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
CCD31_ARATH9.552e-1442.71Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC32002E08EF DevOvary1 Citrus clementina cDNA clone C32002E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876260 ID=FC876260; Name=FC876260; organism=Citrus clementina; type=EST; length=515bp
GGCTTTCTCTCTCACACTAGGCTGTGTCCAGAGAAAAGAGAGAGAAACAA
ATGCCCAAAACTGATTTTTTCATGTTATAATGAGCCAAGGATTTATTTTC
TTCTTCTTCTTTTCTGAAGAACATGGCTTTGCCACAAGATAATACTGATG
CCCACCACCACCAGCTTGAAACCACTCCACTGGCTCTTGACGGCCTTTTT
TGCGATGAAGAAAGTTTCGAGTTTGAGGAGTGTTGTATTGATGCTGAGAC
TGAGAGATGTGAGGAAAAGGAGTCGCCTTTACCACCTGTTTTGCAAGAAC
ATGACTTGTTTTGGGATGATAACGAGTTGTTGTCTTTGATCTGTAAAGAA
AAAAAAGAAAACTTTGTGCCTAGTGATCCAATCTCAGATGAGATTTTAAT
TCTGGCTCGTAAAGAGGTTGTTGAGTGGGTGCTTAGGGTTAAGGCTCATT
TTGGTTTCACTGCTTTGACCGCTATTCTTGCTGTTAACTACTTTGATAGG
TTCATTTTAAGCCAT
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