FC876268

Overview
NameFC876268
Unique NameFC876268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK3_ARATH (Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.143e-49
Identity = 89/108 (82.41%), Postives = 103/108 (95.37%), Query Frame = 3
Query:  243 GRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            GR+LG+PME+VR TY FGRELGRGQFGVTYLVTHK+TKQQ ACKSI +R+L+++DD+EDVRREVQIMHHL+GHRNIV+LKGAYEDRHSVNLIM+LC GGELFDRII+K
Sbjct:   64 GRILGRPMEEVRRTYEFGRELGRGQFGVTYLVTHKETKQQVACKSIPTRRLVHKDDIEDVRREVQIMHHLSGHRNIVDLKGAYEDRHSVNLIMELCEGGELFDRIISK 171          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKY_ARATH (Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana GN=CPK34 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.893e-43
Identity = 81/109 (74.31%), Postives = 98/109 (89.91%), Query Frame = 3
Query:  240 VGRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +G VLG+PMEDV+++Y  G+ELGRGQFGVT+L T K T  QFACK+I+ RKL+N++D+EDVRREVQIMHHLTG  NIVELKGAYED+HSV+L+M+LCAGGELFDRIIAK
Sbjct:   53 IGPVLGRPMEDVKSSYTLGKELGRGQFGVTHLCTQKATGLQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKHSVHLVMELCAGGELFDRIIAK 161          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKH_ARATH (Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.229e-43
Identity = 81/109 (74.31%), Postives = 97/109 (88.99%), Query Frame = 3
Query:  240 VGRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +G VLG+PMEDV+ +Y  G+ELGRGQFGVT+L T K T  QFACK+I+ RKL+N++D+EDVRREVQIMHHLTG  NIVELKGAYED+HSV+L+M+LCAGGELFDRIIAK
Sbjct:   58 IGPVLGRPMEDVKASYSLGKELGRGQFGVTHLCTQKATGHQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKHSVHLVMELCAGGELFDRIIAK 166          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK2_ORYSJ (Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.241e-36
Identity = 69/106 (65.09%), Postives = 90/106 (84.91%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGKP +DVR+ Y  G+ELGRGQFGVTYL T   + +Q+ACKSIS RKL+++ D ED+RRE+QIM HL+G +NIVE +GAYED+ +V+++M+LCAGGELFDRIIAK
Sbjct:   73 ILGKPYDDVRSVYSLGKELGRGQFGVTYLCTEIASGKQYACKSISKRKLVSKADKEDIRREIQIMQHLSGQQNIVEFRGAYEDKSNVHVVMELCAGGELFDRIIAK 178          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK2_MAIZE (Calcium-dependent protein kinase 2 OS=Zea mays GN=CPK2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 70/106 (66.04%), Postives = 89/106 (83.96%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGK  EDVR+ Y FG+ELGRGQFGVTYL T   + +Q+ACKSIS RKL+++ D ED+RRE+QIM HL+G  NIVE +GAYED+ +V+++M+LCAGGELFDRIIAK
Sbjct:   53 ILGKQYEDVRSVYSFGKELGRGQFGVTYLCTEIASGRQYACKSISKRKLVSKADREDIRREIQIMQHLSGQPNIVEFRGAYEDKSNVHVVMELCAGGELFDRIIAK 158          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKX_ARATH (Calcium-dependent protein kinase 33 OS=Arabidopsis thaliana GN=CPK33 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +L KP EDV+  Y   +ELGRGQFGVTYL T K T ++FACKSIS +KL+ + D ED+RRE+QIM HL+G  NIVE KGAYED  +VNL+M+LCAGGELFDRI+AK
Sbjct:   61 ILEKPYEDVKLFYTLSKELGRGQFGVTYLCTEKSTGKRFACKSISKKKLVTKGDKEDMRREIQIMQHLSGQPNIVEFKGAYEDEKAVNLVMELCAGGELFDRILAK 166          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKL_ARATH (Calcium-dependent protein kinase 21 OS=Arabidopsis thaliana GN=CPK21 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.230e-34
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGKP ED+R  Y  G+ELGRGQFG+TY+     T   +ACKSI  RKLI++ D EDV+RE+QIM +L+G  NIVE+KGAYEDR S++L+M+LCAGGELFDRIIA+
Sbjct:   68 ILGKPFEDIRKFYSLGKELGRGQFGITYMCKEIGTGNTYACKSILKRKLISKQDKEDVKREIQIMQYLSGQPNIVEIKGAYEDRQSIHLVMELCAGGELFDRIIAQ 173          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKJ_ARATH (Calcium-dependent protein kinase 19 OS=Arabidopsis thaliana GN=CPK19 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.673e-34
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRI 557
            +LG+P ED++  Y  GRELGRGQFG+TY+ T   + + FACKSI  RKLI   D EDVRRE+QIMH+L+G  NIVE+KGAYEDR SV+L+M+LC GGELFD+I
Sbjct:   86 ILGRPFEDIKEKYSLGRELGRGQFGITYICTEISSGKNFACKSILKRKLIRTKDREDVRREIQIMHYLSGQPNIVEIKGAYEDRQSVHLVMELCEGGELFDKI 188          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK4_SOLTU (Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.673e-34
Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            V+G    ++R+ Y  GR+LG+GQFG TYL T   T  ++ACKSIS RKLI+++DVEDVRRE+QIMHHL+GHRNIV +KGAYED   V+++M++C+GGELFDRII +
Sbjct:   82 VMGHMTPNIRDLYTLGRKLGQGQFGTTYLCTENSTGAEYACKSISKRKLISKEDVEDVRREIQIMHHLSGHRNIVTIKGAYEDPLYVHIVMEICSGGELFDRIIQR 187          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK_DAUCA (Calcium-dependent protein kinase OS=Daucus carota PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGKP ED+R  Y  G+ELGRGQFG  Y  T   + Q +ACKSI  RKL++++D ED++RE+QI+ HL+G  NIVE KG +EDR SV+L+M+LCAGGELFDRIIA+
Sbjct:   69 ILGKPFEDIRGKYTLGKELGRGQFGCVYQCTENSSGQLYACKSILKRKLVSKNDKEDIKREIQILQHLSGQPNIVEFKGVFEDRQSVHLVMELCAGGELFDRIIAQ 174          
The following BLAST results are available for this feature:
BLAST of FC876268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CDPK3_ARATH5.143e-4982.41Calcium-dependent protein kinase 3 OS=Arabidopsis ... [more]
CDPKY_ARATH1.893e-4374.31Calcium-dependent protein kinase 34 OS=Arabidopsis... [more]
CDPKH_ARATH3.229e-4374.31Calcium-dependent protein kinase 17 OS=Arabidopsis... [more]
CDPK2_ORYSJ2.241e-3665.09Calcium-dependent protein kinase isoform 2 OS=Oryz... [more]
CDPK2_MAIZE4.993e-3666.04Calcium-dependent protein kinase 2 OS=Zea mays GN=... [more]
CDPKX_ARATH1.453e-3566.04Calcium-dependent protein kinase 33 OS=Arabidopsis... [more]
CDPKL_ARATH1.230e-3463.21Calcium-dependent protein kinase 21 OS=Arabidopsis... [more]
CDPKJ_ARATH4.673e-3464.08Calcium-dependent protein kinase 19 OS=Arabidopsis... [more]
CDPK4_SOLTU4.673e-3461.32Calcium-dependent protein kinase 4 OS=Solanum tube... [more]
CDPK_DAUCA1.041e-3360.38Calcium-dependent protein kinase OS=Daucus carota ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F06EF DevOvary1 Citrus clementina cDNA clone C32002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876268 ID=FC876268; Name=FC876268; organism=Citrus clementina; type=EST; length=568bp
GGACGCCCAAAACGGAACTCAAGCTAATTGCATTGACTCGCATTTGTCTT
CCTTGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAACTGTAACGGCCT
ACCCTCGTCTCAAACTCAACTCCACTCAACCACCGCCGATCCCGACACTG
GGCCCGGTCACCACCCCAACGGCCTCAAAATAGATCCTCCGGGTCCTCCT
CGTCCTTCTTCCTCTGCCACGTCAGCCACCTCAGGATCCGTTGGCCGCGT
CCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACATCTTCGGCCGCG
AGCTCGGCCGCGGCCAGTTCGGCGTCACCTACTTAGTAACTCACAAAGAC
ACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGCAAGCTCATAAA
CCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGATCATGCACCACC
TAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGTATGAGGACAGG
CACTCTGTGAATTTGATTATGGATTTGTGTGCGGGAGGGGAGTTGTTTGA
TCGGATCATAGCCAAGGG
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