FC876269

Overview
NameFC876269
Unique NameFC876269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.231e-26
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 2
Query:  188 PNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGF 538
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGY 146          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.600e-23
Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGF 538
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GF
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGF 141          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.353e-21
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGF 538
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAF 118          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-21
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGF 538
            F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + F
Sbjct:   27 FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFF 138          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGF 538
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAF 118          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 41/118 (34.75%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  185 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGF 538
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGF 122          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.428e-18
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGF 538
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GF
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGF 144          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.692e-17
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  185 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGF 538
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGF 122          
BLAST of FC876269 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.388e-11
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  203 FSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMGF 538
            F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  L+ S + DC  +   A G  + S+V L+    I+ +TR+   + F
Sbjct:    9 FHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSF 122          
The following BLAST results are available for this feature:
BLAST of FC876269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE9.231e-2646.15Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE5.600e-2342.61Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PHLB_PHLPR2.353e-2144.25Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC4.014e-2139.29Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
LOLB_LOLPR1.525e-2043.36Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
ALL1_OLEEU3.757e-1934.75Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
CHE1_CHEAL1.428e-1839.13Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
LIGV1_LIGVU2.692e-1733.90Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA8.388e-1135.04Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionC32002F07EF DevOvary1 Citrus clementina cDNA clone C32002F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876269 ID=FC876269; Name=FC876269; organism=Citrus clementina; type=EST; length=538bp
GATTTTTTGCTAATTGGAACTGCCTTATATCACTCCCTCAGTGCGTGGTC
CGCTTCTGTCTAGAATTCACTCATTTGCTCTCAATATTCAATCTTGTTCA
GCTTCCTTGATCTCCCATAAGACAATGGCTAGAACATTGTTGTTGATCGC
TCTCTGCGTGCTGCCGGCTCTGGTGAGCGCGGTCCGGCCCAACACTAAAC
CGTTCTCGGTTGAAGGACGCGTGTACTGCGACACCTGCCAAGCCGGCTTT
GAGACCCCCGCTACCACCTACATCGCCGGTGCCAAGGTTAAGGTTGAATG
CAAAGACAGGAAGTCAATGCAAGTAGTATATAGCAGGGAAGGGAAAACAG
ACTCAACTGGAACATATAAGATCCTCGTTTCAGAAGACCATCAGGATCAA
CTTTGCGATGCTGTCCTCATTAGTAGCCCCCAGAATGACTGCAAAACAGT
TGCCCCAGGGCGTGAGCGTTCCCGTGTGATCTTGACCAGTTACAACGGCA
TTTCTTCTGAAACCCGATATGCCAATTCAATGGGCTTC
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