FC876271

Overview
NameFC876271
Unique NameFC876271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.891e-54
Identity = 92/109 (84.40%), Postives = 104/109 (95.41%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGRAPCCEKVG+K+GRWTAEED IL+ YIQ+NGEGSWRSLPKNAGL RCGKSCRLRWINYLR+DLKRGNIT EEEE+++KLH++LGNRWSLIA ++PGRTDNEIKNYWN
Sbjct:    1 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.447e-53
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR PCCEKVGLK+GRWTAEED +L  YI  +GEGSWRSLPKNAGLLRCGKSCRLRWINYLRAD+KRGNI+ EEE+IIIKLHA+LGNRWSLIAS++PGRTDNEIKNYWN
Sbjct:    1 MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.422e-47
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EEDD LT YI+A+GEG WRSLPK AGLLRCGKSCRLRWINYLR DLKRGN + EE+E+IIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.422e-47
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EEDD L  YI+A+GEG WRSLPK AGLLRCGKSCRLRWINYLR DLKRGN T EE+E+IIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 9.958e-47
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EED+ L  YI+A+GEG WRSLPK AGLLRCGKSCRLRWINYLR DLKRGN T EE+E+IIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.699e-46
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EED  L  YI+A+GEG WRSLPK AGLLRCGKSCRLRWINYLR DLKRGN T EE+EIIIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 2.897e-46
Identity = 80/109 (73.39%), Postives = 94/109 (86.24%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    +G WT EED+ L  YI+A+GEG WRSLPK AGLLRCGKSCRLRWINYLR DLKRGN TA+E+++I+KLH+ LGN+WSLIA+ +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 6.454e-46
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EEDD L  YI+A+GEG WRSLP++AGL RCGKSCRLRWINYLR DLKRGN T EE+++IIKLH+ LGN+WSLIA+ +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.438e-45
Identity = 81/109 (74.31%), Postives = 91/109 (83.49%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK    KG WT EED  L  YI+ +GEG WRSLPK+AGLLRCGKSCRLRWINYLR DLKRGN T +E++IIIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN 109
[Close]
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.878e-45
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 3 
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCCEK  + KG WT EED +L  YI+ +GEG WRSLP+ AGL RCGKSCRLRW+NYLR DLKRGN T EE+E+IIKLH+ LGN+WSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWN 109
The following BLAST results are available for this feature:
BLAST of FC876271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MYB12_ARATH2.891e-5484.40Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE2.447e-5385.32Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB1_HORVU3.422e-4777.06Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB08_ANTMA3.422e-4777.06Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB4_ARATH9.958e-4776.15Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYB30_ANTMA1.699e-4677.06Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB38_MAIZE2.897e-4673.39Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB32_ARATH6.454e-4674.31Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB6_ARATH1.438e-4574.31Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB3_ARATH1.878e-4572.48Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F09EF DevOvary1 Citrus clementina cDNA clone C32002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876271 ID=FC876271; Name=FC876271; organism=Citrus clementina; type=EST; length=491bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAAC
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