FC876272

Overview
NameFC876272
Unique NameFC876272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10324 contig Ccv1_Contig10324:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: HA22I_ARATH (HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.169e-40
Identity = 79/151 (52.32%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    4 EDRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSARFSNAPAHENQKHNGEKQHAPSAP---PPPEN 447
            ++R EI+QLRFWC+YWILVA LTV ER  DA  SW PMY E KLAFFIYLW PKT+GT +VY+S  RPY+S+HE DID  +LELR R  D+A+ YWQ  A   Q +  +I++++A QS      P    QK  G    AP+ P   P P++
Sbjct:   29 KNRPEIEQLRFWCQYWILVACLTVFERVGDAFVSWVPMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDMAVIYWQRVASYGQTRILEILQYVAAQSTPRPQPP----QKRGGRANQAPAKPKKAPVPQS 175          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: HA22J_ARATH (HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 9.111e-39
Identity = 71/156 (45.51%), Postives = 107/156 (68.59%), Query Frame = 1
Query:    4 EDRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSARFSNAPAHENQKHNGEKQHAPSAPPPPENGFNSPRTP 471
            +++V+I++LRFWC+YWIL+A+++  ER  D   SW P+YGE+K+ FF+YLW PKT+GT  VY+++L+PY+++HET+IDR+I+ELRAR WD  I+Y+ N A+  Q       +++  QS RFS A A++         +A S P   +N   SPR P
Sbjct:   29 KNKVDIEELRFWCQYWILLALISSFERVGDFFISWLPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDFFIFYFNNFAQAGQSTLIQGFQYVLAQSVRFSAAAANQPPTERNVNMNAQS-PVEMDNDPPSPRAP 183          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: HA22H_ARATH (HVA22-like protein h OS=Arabidopsis thaliana GN=HVA22H PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.679e-35
Identity = 72/155 (46.45%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    4 EDRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSA--------RFSNAPAHENQKHNGEKQHAPSAPPPPE 444
            +++ E+ QLRFWC+YWILVA LT+ ER  DA+ASW P+Y E KLAFFIYLW PKT+GT +VY S  +PYV+KHE +IDR ++ELR +  DLA+ Y +      Q +  +I+ F+A QS         + + AP  E QK    K  + +A   P+
Sbjct:   29 KNKPEMQQLRFWCQYWILVAALTIFERVGDALASWVPLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLAVIYCRKAVSYGQTRIVEILHFVALQSTPKPKPKEKKQAAAPEEEEQKQPDLKATSQAASSNPQ 183          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: HA22G_ARATH (Putative HVA22-like protein g OS=Arabidopsis thaliana GN=HVA22G PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.679e-35
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    7 DRVEIDQLRFWCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSARFSNA 375
            ++ EI QL+FWC+YWI+VA LT+ ER  DA+ SW PMY E KLAFFIYLW PKT+GT +VY S  RPY++KHE +IDR +++++ R  D+A+ Y Q      Q KFF+I++++  QS   S A
Sbjct:   19 NKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWLPMYSEAKLAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMAMIYLQKAINQGQTKFFEILQYITEQSTPKSKA 141          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP1_MOUSE (Receptor expression-enhancing protein 1 OS=Mus musculus GN=Reep1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.852e-16
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSA---RFSNAPAHENQKHNGEKQHAPSAPPPPENGFNS 459
            W  YWI+ A+ T  E F D    WFP Y ELK+AF  +L SP T+G+  +Y+  + P +S  E +ID  +++ + R +D  +++ +    L+      ++    GQ A   R  +    +     G+   APS PPPP  G +S
Sbjct:   38 WMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKR--GLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGTGRSS 179          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP1_HUMAN (Receptor expression-enhancing protein 1 OS=Homo sapiens GN=REEP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 45/141 (31.91%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYYWQNCAELSQEKFFDIIKFLAGQSA---RFSNAPAHENQKHNGEKQHAPSAPPPPENG 450
            W  YWI+ A+ T  E F D    WFP Y ELK+AF  +L SP T+G+  +Y+  + P +S  E +ID  +++ + R +D  +++ +    L+      ++    GQ A   R  +    +     G+   APS PPPP +G
Sbjct:   38 WMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKR--GLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSG 176          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP4_BOVIN (Receptor expression-enhancing protein 4 OS=Bos taurus GN=REEP4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 31/84 (36.90%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+   +E F D   SWFP Y E+K+AF ++L SP T+G   +Y+  + P +S+HE +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALFMAVETFTDIFISWFPFYYEIKMAFVLWLLSPYTRGASMLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP3_HUMAN (Receptor expression-enhancing protein 3 OS=Homo sapiens GN=REEP3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.553e-14
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+ TV+E   D   +WFP+Y ELK+AF I+L SP T+G   +Y+  L P +S  E +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALYTVIETVADQTVAWFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP3_MOUSE (Receptor expression-enhancing protein 3 OS=Mus musculus GN=Reep3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+ TV+E   D   +WFP+Y ELK+AF I+L SP T+G   +Y+  L P +S  E +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALYTVIETVADQTLAWFPLYYELKIAFVIWLLSPYTRGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNF 121          
BLAST of FC876272 vs. ExPASy Swiss-Prot
Match: REEP3_DANRE (Receptor expression-enhancing protein 3 OS=Danio rerio GN=reep3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   37 WCKYWILVAMLTVLERFLDAIASWFPMYGELKLAFFIYLWSPKTQGTGFVYQSVLRPYVSKHETDIDRRILELRARLWDLAIYY 288
            W  YWI+ A+ TV+E   D   +WFP+Y E+K+AF I+L SP T+G   +Y+  L P +S  E +ID  I++ + R ++  + +
Sbjct:   38 WMMYWIVFALFTVVETVADLTIAWFPLYYEIKIAFVIWLLSPYTRGASVIYRKALHPLLSSKEREIDDYIVQAKERSYETMVNF 121          
The following BLAST results are available for this feature:
BLAST of FC876272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HA22I_ARATH2.169e-4052.32HVA22-like protein i OS=Arabidopsis thaliana GN=HV... [more]
HA22J_ARATH9.111e-3945.51HVA22-like protein j OS=Arabidopsis thaliana GN=HV... [more]
HA22H_ARATH4.679e-3546.45HVA22-like protein h OS=Arabidopsis thaliana GN=HV... [more]
HA22G_ARATH4.679e-3552.03Putative HVA22-like protein g OS=Arabidopsis thali... [more]
REEP1_MOUSE2.852e-1631.94Receptor expression-enhancing protein 1 OS=Mus mus... [more]
REEP1_HUMAN3.725e-1631.91Receptor expression-enhancing protein 1 OS=Homo sa... [more]
REEP4_BOVIN2.669e-1436.90Receptor expression-enhancing protein 4 OS=Bos tau... [more]
REEP3_HUMAN4.553e-1439.29Receptor expression-enhancing protein 3 OS=Homo sa... [more]
REEP3_MOUSE5.947e-1439.29Receptor expression-enhancing protein 3 OS=Mus mus... [more]
REEP3_DANRE5.947e-1438.10Receptor expression-enhancing protein 3 OS=Danio r... [more]

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Properties
Property NameValue
Genbank descriptionC32002F11EF DevOvary1 Citrus clementina cDNA clone C32002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876272 ID=FC876272; Name=FC876272; organism=Citrus clementina; type=EST; length=473bp
GGAGAAGACAGGGTTGAGATAGACCAACTCAGGTTCTGGTGCAAATATTG
GATCCTTGTGGCAATGTTGACAGTTCTTGAGAGGTTTCTTGATGCAATTG
CTTCATGGTTTCCGATGTATGGCGAGCTGAAACTGGCATTTTTCATCTAC
TTGTGGTCTCCAAAGACACAGGGAACTGGGTTTGTTTATCAAAGTGTGTT
GAGGCCTTACGTGTCGAAGCACGAAACGGACATTGATAGAAGGATTCTGG
AATTGAGAGCAAGACTGTGGGATCTGGCTATTTACTATTGGCAAAATTGC
GCAGAACTGAGTCAAGAGAAATTCTTTGACATAATCAAGTTCTTGGCTGG
CCAATCTGCTAGGTTCTCTAACGCCCCTGCCCATGAGAATCAGAAACACA
ACGGTGAGAAGCAGCATGCACCGAGCGCGCCGCCGCCACCGGAAAACGGG
TTTAACTCACCCAGAACGCCAAA
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