FC876278

Overview
NameFC876278
Unique NameFC876278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig25 contig Ccv1_Contig25:68..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2F_ARATH (Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 4.439e-71
Identity = 128/163 (78.53%), Postives = 143/163 (87.73%), Query Frame = 2
Query:    2 IRSVIDSLRIPTSSRAYASVAVGSDMVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            +RS  +S RI  SSR ++ +A G+D+ SAA  VSLQKAR+WDEGVSS F+TTP+ DIFKGKKVVIFGLPGAYTGVCS QHVPSYK++IDKFKAKGIDSVICV+VNDP+ +NGWAEKL AKD IEFYGDFDG FHKSL L KDLSAALLGPRSERWSAYVEDGK
Sbjct:   14 LRSAANSARIGVSSRGFSKLAEGTDITSAAPGVSLQKARSWDEGVSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGLDKDLSAALLGPRSERWSAYVEDGK 176          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2F_ORYSJ (Peroxiredoxin-2F, mitochondrial OS=Oryza sativa subsp. japonica GN=PRXIIF PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 3.517e-68
Identity = 123/151 (81.46%), Postives = 135/151 (89.40%), Query Frame = 2
Query:   38 SSRAYASVAVGSDMVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            +SR  ASV  GSD+VSAA  VSLQKAR+WDEGV++NF+TTP+KDIF GKKVVIFGLPGAYTGVCS  HVPSYKNNIDK KAKG+DSVICV+VNDPY +NGWAEKLQAKD IEFYGDFDGSFHKSLDL  DLSAALLG RS RWSA+V+DGK
Sbjct:   23 ASRGLASVGSGSDIVSAAPGVSLQKARSWDEGVATNFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGK 173          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: MALF2_MALFU (Putative peroxiredoxin OS=Malassezia furfur PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 2
Query:  131 GVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            G+ + F T   +D +KGKKVVI  +PGAYT +C  QH+P     +D+ KAKG+D+V  +A NDP+VM  W     AKD + F  D D +F K+L    DLSA   G R+ R++  ++D K
Sbjct:   35 GIPTTFKT---RDEWKGKKVVIVSIPGAYTPICHQQHIPPLVKRVDELKAKGVDAVYVIASNDPFVMAAWGNFNNAKDKVVFATDIDLAFSKALGATIDLSAKHFGERTARYALIIDDNK 151          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.109e-21
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  122 WDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            W +G         +  +  GKKVV+FG+PGA+T  CSNQHVP + N  ++ KAKG+D ++ V+VNDP+VM  WA+       ++F  D  G++ K+L L  DLS   LG RS R++   ++ K
Sbjct:   17 WFDG-EDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLK 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   29 IPTSSRAYASVAVGSDMVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLS--AALLGPRSERWSAYVEDG 487
            +  S+ A A++AVG  +  A          ++ +       T  ++D+  GKKVV+F +PGA+T  C+ +HVP +     + +AKG+D+V CV+VND +VM  W E L   D +    D +G   +++ +  DLS   A LG RS R++   EDG
Sbjct:   61 VSASAPAAATIAVGDKLPDATL--------SYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDG 207          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.355e-19
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  152 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            T  +  I  GKKV++FG+PGA+T  CS  HVP +    ++ K+KGID +IC +VNDP+VM  W +  Q    ++F  D  G +   L L  DL    LG RS R++  +++ K
Sbjct:   26 TVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLK 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: Y1621_SYNY3 (Putative peroxiredoxin sll1621 OS=Synechocystis sp. (strain PCC 6803) GN=sll1621 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 2
Query:  110 KARTWDEGVSS----NFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            K R  DE V       +     + IF GKKVV+F LPGA+T  CS+ H+P Y+   ++F+A G+D +IC++VND +VM  W +++ A D ++   D +G F + + +  + S    G RS R+S +V DGK
Sbjct:   12 KTRVRDESVPGPNPYRWEDKTTEQIFGGKKVVLFSLPGAFTPTCSSNHLPRYEQLFEEFQALGVDDIICLSVNDAFVMFQWGKQIGA-DKVKLLPDGNGEFTRKMGMLVEKSNLGFGMRSWRYSMFVNDGK 141          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  152 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            T  +  +  GKKV++FG+PGA+T  CS +HVP +    ++ K+KG+D +IC +VNDP+VM  W +       ++F  D  G +   L L  DL    LG RS R++  ++D K
Sbjct:   26 TASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLK 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.726e-19
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  152 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            T  +  I  GKKV++FG+PGA+T  CS  HVP +    ++ K+KGID +IC +VNDP+VM  W +       ++F  D  G +   L L  DL    LG RS R++  +++ K
Sbjct:   26 TVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLK 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRDX5_BOVIN (Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PRDX5 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   44 RAYASVAVGSDMVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL--GPRSERWSAYVEDG 487
            R + S AV    +     +   +    + G   N A     ++FKGKK V+FGLPGA+T  CS  H+P +    D  KAKGI  V C+ VND +V   WA   +A+  +    D  G+F K  DL  D S   L    R +R+S  +EDG
Sbjct:   49 RGFRSAAVAMAPIKVGDAIPSVEVFEKEPGNKVNLA-----ELFKGKKGVLFGLPGAFTPGCSKTHLPGFVEQADALKAKGIQVVACLTVNDVFVTEEWARAHKAEGKVRLLADPSGTFGKETDLLLDDSLLFLFGNHRLKRFSMVIEDG 193          
The following BLAST results are available for this feature:
BLAST of FC876278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRX2F_ARATH4.439e-7178.53Peroxiredoxin-2F, mitochondrial OS=Arabidopsis tha... [more]
PRX2F_ORYSJ3.517e-6881.46Peroxiredoxin-2F, mitochondrial OS=Oryza sativa su... [more]
MALF2_MALFU1.310e-2243.33Putative peroxiredoxin OS=Malassezia furfur PE=1 S... [more]
PRX2C_ORYSJ1.109e-2140.65Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PR2E1_ORYSJ9.385e-2134.19Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2D_ARATH1.355e-1939.82Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
Y1621_SYNY31.770e-1938.17Putative peroxiredoxin sll1621 OS=Synechocystis sp... [more]
PRX2B_ARATH2.312e-1938.05Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ARATH6.726e-1938.94Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRDX5_BOVIN7.436e-1836.00Peroxiredoxin-5, mitochondrial OS=Bos taurus GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionC32002G09EF DevOvary1 Citrus clementina cDNA clone C32002G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876278 ID=FC876278; Name=FC876278; organism=Citrus clementina; type=EST; length=492bp
GATAAGGTCAGTGATCGATAGCCTTCGAATCCCCACGTCATCAAGAGCGT
ATGCGTCGGTTGCAGTGGGCAGTGACATGGTCTCTGCCGCGCAGGATGTT
TCTCTCCAGAAAGCTCGGACCTGGGACGAAGGTGTCTCTTCCAATTTCGC
CACCACTCCTATTAAAGACATTTTCAAGGGAAAGAAAGTAGTCATTTTCG
GGCTCCCTGGTGCATATACGGGAGTTTGTTCAAATCAGCATGTCCCTAGT
TACAAGAATAACATTGACAAGTTCAAGGCTAAAGGGATTGATTCTGTAAT
TTGTGTGGCCGTTAATGATCCATACGTTATGAATGGCTGGGCAGAGAAAC
TTCAAGCCAAAGATGTTATTGAATTTTATGGTGACTTTGATGGAAGCTTC
CACAAGAGCTTGGACTTGGGAAAAGATCTTTCTGCTGCTTTGCTTGGTCC
TCGCTCTGAAAGGTGGTCAGCATATGTAGAGGATGGGAAGAT
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