FC876281

Overview
NameFC876281
Unique NameFC876281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10326 contig Ccv1_Contig10326:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.761e-72
Identity = 116/169 (68.64%), Postives = 144/169 (85.21%), Query Frame = 1
Query:  136 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSDVAEAPAPGPAELISLGL 642
            AHN+TR+LA HPSFS+F+H+L+ THLADEINR+ TITVCA+DNA MS L SK  +++T+KN+LSLH+LLDYFG KKLHQI +G+ALAAT+FQATG+APG+SGFVNITDL+GGKVGFG   +GG L + FVKS+EE PYNIS+IQIS+VL S+ A AP P PAE+   G+
Sbjct:   24 AHNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFG--PDGGDLSSFFVKSIEEVPYNISIIQISRVLPSETAAAPTPAPAEMNLTGI 190          

HSP 2 Score: 51.6026 bits (122), Expect = 2.761e-72
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  630 LTGIMSAHGCKQFADALLANADASKTYXDAAIGGM 734
            LTGIMSAHGCK FA+ LL N  ASKTY ++  GGM
Sbjct:  187 LTGIMSAHGCKVFAETLLTNPGASKTYQESLEGGM 221          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.322e-61
Identity = 108/165 (65.45%), Postives = 134/165 (81.21%), Query Frame = 1
Query:  136 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSDVAEAPAPGPAELI 630
            AHNITRILA  P FSTFNHYLS THLADEINR+ TITV A+DN+ MS +LS   S+  ++N+LSLH+L+DYFG KKLHQIT+G+   A+MFQ+TGSA G+SG++NITD+KGGKV FG +D+  KL A +VKSV EKPYNISV+ IS+VL+S  AEAP   P++LI
Sbjct:   26 AHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINITDIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSPEAEAPTASPSDLI 190          

HSP 2 Score: 31.5722 bits (70), Expect = 9.322e-61
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 3
Query:  630 LTGIMSAHGCKQFADALLANADASKTYXDAAIGGM 734
            LT I+   GCK F+D +L +  A KT+ D   GG+
Sbjct:  191 LTTILEKQGCKAFSD-ILKSTGADKTFQDTVDGGL 224          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.345e-48
Identity = 89/160 (55.62%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  136 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQI-SKVLSSDVAEAPAP 612
            +HNIT+ILA  P +S+FN YLS T LADEIN +TTITV  ++N  MS L  KHP ++ +K+ LSL +LLDY+  +KLH+I+ GT L+ T++Q TG+APG+ GFVNITDLKGGKVGFG+  +G KLD+ + KSV++ PYNIS+++I + +++  V  APAP
Sbjct:   25 SHNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAGKHP-LSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPGVLTAPAP 183          

HSP 2 Score: 28.4906 bits (62), Expect = 7.345e-48
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 3
Query:  630 LTGIMSAHGCKQFADALLANADASKTYXDAAIGGM 734
            +TG++   GCK FA+ LL ++   KTY  A   G+
Sbjct:  190 ITGLLEKAGCKTFAN-LLVSSGVLKTYESAVEKGL 223          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana GN=FLA10 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.127e-45
Identity = 89/162 (54.94%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  139 HNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQI-SKVLSSDVAEAPAPGPA 621
            HNIT+IL+  P +S+FN+YLS T LADEIN +TTITV  ++N  MS L  KHP ++ VKN LSL +LLDY+   KLHQ++ GT L  T++Q TG A G+ GFVN+TDLKGGKVGFG+   G KLD+ + KSV++ PYNISV++I + +++  +  APAP  A
Sbjct:   26 HNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKHP-LSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGILTAPAPSSA 186          

HSP 2 Score: 25.409 bits (54), Expect = 1.127e-45
Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 3
Query:  630 LTGIMSAHGCKQFADALLANADASKTYXDAAIGGM 734
            +TG++   GCK FA+ LL ++   KT+      G+
Sbjct:  191 ITGLLEKAGCKTFAN-LLVSSGVIKTFESTVEKGL 224          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA14_ARATH (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 72/166 (43.37%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  142 NITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSDVA--EAPAPGPAELIS 633
            NIT IL  H  FS FN  LS T LA  IN++ TITV  + N  +S L  +  S+  +K +LSLHI+LDY+  KKL  ++  T L  T+FQ++G A G  GF+N T +K G V FG+   G  LDA    +V   P+NISV+ IS  +  DV    AP   P   +S
Sbjct:   25 NITNILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSLSGQPTSV--IKKILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHISSAIMIDVKGDNAPTASPLSPVS 188          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA3_ARATH (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  136 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSSDVAEAPAPGP 618
            A NITR+L  +P FST    L+ T L   IN++ TITV A++N  +  +  +      VKN+L  H++LDYF   KL  +   + L  T++Q+TG     +GF+N T    GK+ FG+   G    A ++ +V   PYN+SV+QIS  + +    +P   P
Sbjct:   24 AVNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGRPEE--EVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTGLGQQQNGFLNCTK-SNGKIYFGSGVKGAPQTAEYITTVFRNPYNLSVVQISMPIVAPGLGSPVKVP 181          
BLAST of FC876281 vs. ExPASy Swiss-Prot
Match: FLA5_ARATH (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana GN=FLA5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  136 AHNITRILAGHPSFSTFNHYLSVTHLADEINRKTTITVCAIDNAGMSELLSKHPSITTVKNVLSLHILLDYFGAKKLHQITNGTALAATMFQATGSAPGSSGFVNITDLKGGKVGFGAKDNGGKLDALFVKSVEEKPYNISVIQISKVLSS------------------------DVAEAPAPGPA 621
            A+NIT     +  FST       T L   I++  TITV A+ N  +S + ++  S   ++N+L  H++LDY+   KL  +   + +  T++Q TG     +GF+N++  K G+V FG++     L+A +V +V   PYN+S+IQI+  + +                        D +  PAPGPA
Sbjct:   24 ANNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDAISSITNR--SEVELRNILMTHVILDYYDELKLQGMREKSIMLTTLYQTTGLGEQMNGFLNVSKSK-GRVYFGSEVKNSPLNAEYVSTVYHNPYNLSIIQITMPIVAPGLSLAIFPPPPPYVHVAPYPTPMDASVVPAPGPA 206          
The following BLAST results are available for this feature:
BLAST of FC876281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FLA1_ARATH2.761e-7268.64Fasciclin-like arabinogalactan protein 1 OS=Arabid... [more]
FLA2_ARATH9.322e-6165.45Fasciclin-like arabinogalactan protein 2 OS=Arabid... [more]
FLA8_ARATH7.345e-4855.63Fasciclin-like arabinogalactan protein 8 OS=Arabid... [more]
FLA10_ARATH1.127e-4554.94Fasciclin-like arabinogalactan protein 10 OS=Arabi... [more]
FLA14_ARATH1.953e-2943.37Fasciclin-like arabinogalactan protein 14 OS=Arabi... [more]
FLA3_ARATH4.360e-2136.02Fasciclin-like arabinogalactan protein 3 OS=Arabid... [more]
FLA5_ARATH2.239e-1730.11Fasciclin-like arabinogalactan protein 5 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC32002H02EF DevOvary1 Citrus clementina cDNA clone C32002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876281 ID=FC876281; Name=FC876281; organism=Citrus clementina; type=EST; length=734bp
GGATAACCAAAAGAACTCAAAAATCAAACTCCTCTGTTTCTCTCTTCTCG
TTCTCTCTCCTCGAAAACGACAATGCCGCAGCTCAAAACGGCATTCCTCC
TCTTCTCTCTTCTCCTCCTCGTCTCGGCGGCCCAAGCGCACAACATCACC
CGCATACTCGCCGGCCACCCTTCATTCTCGACGTTCAACCACTACCTGTC
GGTGACCCACCTCGCCGACGAGATCAACCGCAAGACCACCATCACCGTCT
GCGCCATCGACAACGCCGGCATGTCGGAGCTCCTCTCGAAGCACCCGTCC
ATCACCACCGTCAAAAACGTCCTCTCCCTCCACATCCTCTTGGACTACTT
TGGCGCCAAAAAGCTCCACCAGATCACAAACGGCACCGCATTGGCCGCCA
CCATGTTTCAGGCAACTGGTTCGGCCCCCGGCTCATCTGGGTTCGTTAAC
ATAACCGACTTGAAAGGCGGGAAAGTCGGTTTTGGCGCCAAGGATAATGG
TGGAAAACTCGATGCCCTCTTTGTTAAGTCCGTTGAGGAGAAGCCTTATA
ACATTTCCGTTATTCAGATCAGCAAGGTCTTGTCTTCTGACGTGGCGGAG
GCTCCGGCGCCGGGACCCGCTGAGCTTATCTCACTGGGATTATGTCTGCT
CATGGATGTAAGCAGTTTGCTGATGCTCTTTTGGCTAATGCTGACGCTTC
CAAAACTTATCANGATGCTGCAATAGGAGGGATG
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