FC876285

Overview
NameFC876285
Unique NameFC876285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:372..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876285 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 4.784e-55
Identity = 111/131 (84.73%), Postives = 118/131 (90.08%), Query Frame = 1
Query:  121 LADLKNEASFLSSDGSLAIHAG----RGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISALEGAESTVIMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 501
            L D K+  SFLSSDGSL +HAG    RGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISALEGAEST++MASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  L
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFL 292          
The following BLAST results are available for this feature:
BLAST of FC876285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH4.784e-5584.73Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC32002H09EF DevOvary1 Citrus clementina cDNA clone C32002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876285 ID=FC876285; Name=FC876285; organism=Citrus clementina; type=EST; length=503bp
TCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCCCCGCCCGT
CCCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGACGGATTGA
AAAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGGCTTCGTTT
TTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTCGTGGTATAGTAAC
AGATGCAATTACTACCCCAGTGGTGAATACTTCTGCTTACTTCTTTAAGA
AAACTGCTGAGCTTATTGATTTCAAGGAGAAACGTCGTGCAAGTTTTGAA
TATGGGAGGTATGGAAACCCAACAACTGTGGTCGTTGAGGAGAAGATAAG
TGCACTTGAGGGGGCTGAATCAACTGTGATTATGGCATCTGGAATGTGTG
CTAGCACAGTCATGTTGTTGGCATTGGTTCCAGCCGGTGGGCATATTGTG
ACAACCACTGATTGCTACAGGAAGACTAGGATTTTCATTGAGACTGTTCT
GCC
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