FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  232 FRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ++G    F    DQ +L +A++  + LP +C    CT+CA RI SG++ QP+A+G+  E   +GY LLCV YP SD+++ET  ED
Sbjct:   10 YQGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKED 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ANASP (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=petF PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR   C++CA ++ SG + Q +   +  +    GY L CV YP+SDV ++T  E+
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T KVT+ +   G  HE  VP+D+YIL  AE Q   LPF+CR   C++CA ++ SG + Q +   +  +    GY L CV YP+SDV ++T  E+
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T KVT+ +   G  HE  VP+D+YIL  AE +   LPF+CR   C++CA ++ SG + Q +   +  +    GY L CV YP+SDV ++T  E+
Sbjct:    3 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  208 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            +KVT+ D+  G      VP+D+YIL  AE Q + LP++CR   C++CA +I SG + Q +   +  +   KGY L CV YP+SD+++ET  E+
Sbjct:    5 YKVTLVDQ-EGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T KVT+ +   G  +   VP+D+YIL  AE Q   LPF+CR   C++CA ++ SG + Q +   +  +    GY L CV YP+SDV ++T  E+
Sbjct:    3 TFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 44/134 (32.84%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   82 TSSTYNNTRNPSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            T ++    ++PSSL    + T    L+T+  ++ S   ++  +KV +     G  HEF  P+D YIL  AE+  + LP++CR   C++CA +I+SG + Q +   +    + +GY L CV YP SD  + T  E
Sbjct:   19 TQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVS---AMAVYKVKLVGP-EGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKE 148          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ +   G+     VP+DQYIL  AE   I LP++CR   C++CA ++ SG + Q +   +  +    GY L CV YP+SD  +ET  E+
Sbjct:    3 TYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.871e-14
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  238 GVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            G  +EF VP+DQYIL  AE   + LP++CR   C++CA +I+ GQ+ Q +   +      KGY L CV YP SD+ + T  E+
Sbjct:   13 GQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SYNP4 (Ferredoxin OS=Synechococcus sp. (strain PCC 7418) PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.750e-14
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ++KVT+ +   G+     VP+D+YIL  AE + I LP++CR   C++CA +IK G+I Q +   +  +    GY L CV YP+SD  + T  E+
Sbjct:    3 SYKVTLINEEMGLNETIEVPDDEYILDVAEEEGIDLPYSCRAGACSTCAGKIKEGEIDQSDQSFLDDDQIEAGYVLTCVAYPASDCTIITHQEE 96          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER2_SYNP64.006e-1642.35Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_ANASP4.006e-1641.49Ferredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
FER1_ANASO4.006e-1641.49Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER_NOSMU8.925e-1640.43Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_NOSMU1.289e-1440.86Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ANAVT1.289e-1439.36Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER3_MAIZE1.683e-1432.84Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_MASLA2.871e-1439.36Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_RAPSA2.871e-1442.17Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_SYNP43.750e-1438.30Ferredoxin OS=Synechococcus sp. (strain PCC 7418) ... [more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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