FC876288

Overview
NameFC876288
Unique NameFC876288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length122
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:83..204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.466e-14
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRADGPATVLAI T  PAHSVNQADYPDYYFRITKSEHM
Sbjct:   10 AQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHM 49          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.341e-12
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRADGPATVLAI T  PA+ V QADYPDYYFRITKSEHM
Sbjct:   12 AQRADGPATVLAIGTATPANYVTQADYPDYYFRITKSEHM 51          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA+GPATVLAI T  PA+ V QADYPDYYFRITKSEHM
Sbjct:   13 AQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHM 52          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA+GPATVLAI T  PA+ V QADYPDYYFRITKSEHM
Sbjct:   13 AQRAEGPATVLAIGTATPANCVYQADYPDYYFRITKSEHM 52          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.896e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  PA+ V+QADYPDYYFRITKSEHM
Sbjct:   14 AQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHM 53          
The following BLAST results are available for this feature:
BLAST of FC876288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CHS2_CITSI1.466e-1490.00Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS3_RUTGR2.341e-1282.50Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHSY_ORYSJ8.896e-1280.00Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI8.896e-1280.00Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHS7_SORBI8.896e-1280.00Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS6_SORBI8.896e-1280.00Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI8.896e-1280.00Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS4_SORBI8.896e-1280.00Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHS3_SORBI8.896e-1280.00Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHS2_SORBI8.896e-1280.00Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32002H12EF DevOvary1 Citrus clementina cDNA clone C32002H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876288 ID=FC876288; Name=FC876288; organism=Citrus clementina; type=EST; length=122bp
ATTCTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCCGTACGGTC
GCGCCTGCCCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAG
GATCACAAAGAGCGAGCATATG
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