FC876289

Overview
NameFC876289
Unique NameFC876289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 3.725e-51
Identity = 91/162 (56.17%), Postives = 113/162 (69.75%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 582
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168          

HSP 2 Score: 22.3274 bits (46), Expect = 3.725e-51
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  603 VQKLCSGGCDN 635
            ++K  SGGCDN
Sbjct:  179 IKKFASGGCDN 189          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 3.725e-51
Identity = 91/162 (56.17%), Postives = 113/162 (69.75%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 582
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168          

HSP 2 Score: 22.3274 bits (46), Expect = 3.725e-51
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  603 VQKLCSGGCDN 635
            ++K  SGGCDN
Sbjct:  179 IKKFASGGCDN 189          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 1.827e-50
Identity = 90/162 (55.56%), Postives = 113/162 (69.75%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 582
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168          

HSP 2 Score: 21.1718 bits (43), Expect = 1.827e-50
Identity = 6/11 (54.55%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  603 VQKLCSGGCDN 635
            +++  SGGCDN
Sbjct:  179 IKRFASGGCDN 189          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.104e-50
Identity = 91/162 (56.17%), Postives = 112/162 (69.14%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV 582
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168          

HSP 2 Score: 22.3274 bits (46), Expect = 3.104e-50
Identity = 7/11 (63.64%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  603 VQKLCSGGCDN 635
            ++K  SGGCDN
Sbjct:  179 IKKFASGGCDN 189          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.559e-48
Identity = 90/169 (53.25%), Postives = 111/169 (65.68%), Query Frame = 1
Query:   82 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            M  Q +++GHED VHD   DYYGK LAT SSD  IKI  VG    QHL  L GH+G VW+VAWAHPKFG ILAS S+D  VI+WKE  +N W   H +  H+ SVNSI WAPHE GL LAC SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNS 168          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.737e-47
Identity = 95/193 (49.22%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   88 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-----------------------GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            P+ IET HED VHD  +D+YGKRLAT SSD ++K+  + N T    A+ L GH+G VW+VAWAHP FG ILASCS+DG V+IWK+                        ++  W  IK+H    H +SVNSI WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP+  PG+L+ +
Sbjct:   18 PKNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISA 207          

HSP 2 Score: 21.1718 bits (43), Expect = 6.737e-47
Identity = 7/12 (58.33%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  603 VQKLCSGGCDNT 638
            V++  S GCDNT
Sbjct:  225 VKRFASAGCDNT 236          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 92/178 (51.69%), Postives = 121/178 (67.98%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-GSGFLDQFRSFV 618
            +GH+D +HD  MDYYG+RLAT SSD +IKI  +  ++ + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +S     + W +   F  H +SVN + WAPHELG  LAC SSDG++SV   R D  W T +I  AH +GV SVSWAP+ APG+++  +    Q R FV
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGSVISATPSTGQIRRFV 183          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.161e-45
Identity = 88/170 (51.76%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +GH++ +HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S
Sbjct:    9 SGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISS 176          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS 588
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +   + + +  L GH GAVW VAWAHPK+G+ILAS  +DG V+IW+E  +  W +   F  HK+SVN + W+PHE G  LAC SSDGN+SV   + D  W+   I  AH +GV SVSWAP+T PG++V S
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNILASAGYDGKVLIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVLEFK-DNSWE-HNIFHAHGLGVNSVSWAPATTPGSIVSS 169          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.058e-44
Identity = 92/181 (50.83%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG-FLDQFRSFV 618
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +  +T + +  L GH+G VW V WAHPKFG+ILAS S+DG V+IW+E +        S  W K   F  H +SVN I WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+LV S   + Q R FV
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRFV 188          
The following BLAST results are available for this feature:
BLAST of FC876289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEC13_RAT3.725e-5156.17Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE3.725e-5156.17Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN1.827e-5055.56Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN3.104e-5056.17Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI4.559e-4853.25Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA6.737e-4749.22Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_COCIM2.766e-4551.69Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_ASPNC6.161e-4551.76Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_NEUCR1.793e-4451.85Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_EMENI3.058e-4450.83Protein transport protein sec13 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionC32003A01EF DevOvary1 Citrus clementina cDNA clone C32003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876289 ID=FC876289; Name=FC876289; organism=Citrus clementina; type=EST; length=665bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACGTGAAGGTGTGGA
GCTGTACATGGATTT
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