FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNPX (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain WH8102) GN=carA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.900e-23
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFE 366
            SYAGQ V  T P +GNTGVN DD+E+      G++ R L+   SNWRC+E+L N++    ++GI  VDTRA+ RRLR  G++ GV+S++       L E+  +  + G++L S VS  EP+E
Sbjct:   51 SYAGQLVTFTYPELGNTGVNGDDQEADHPHARGVIARQLAPCASNWRCSESLDNWMERHGLVGICGVDTRALVRRLRDGGAINGVISSDGRSPADLLAEVRHAPSMEGLNLASQVSTTEPYE 172          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_TERTT (Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SYA Q V +T PHIGNTG N +DEE +  +  GLVIR L +  SN+R +++L  YL+ +NI+GI+D+DTR +TR LR  G+L G +   +   + E LE +R +  + G+DL  +VS ++ ++  + + ++G
Sbjct:   55 SYARQIVTLTYPHIGNTGTNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRDKGALAGCIMAGD-VDEAEALETARGFAGLQGMDLAKEVSTKDTYQWRDGSWKLG 185          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNY3 (Carbamoyl-phosphate synthase small chain OS=Synechocystis sp. (strain PCC 6803) GN=carA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381
            SY GQ V  T P +GNTGVN +DEES    + G+V R+++   SNWR  ++L +YL E  I+GI  +DTRA+TR+LR  G++ G +STE  + +  L  +  +  + G++L+ +V+  E +E  +ST
Sbjct:   51 SYCGQIVTFTYPELGNTGVNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRSIGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHEVYEWTDST 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HALER (Carbamoyl-phosphate synthase small chain OS=Halomonas eurihalina GN=carA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.468e-22
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL----STEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY+ Q V +T PHIGNTGVN +D ES     AGLVIR L +  S++RC +++ +YLA++N++GI+D+ TR +TR LR  GS  G +      E   ++   LE +R++  + G+DL   VS  EP+E  E    +G
Sbjct:   47 SYSRQIVTLTYPHIGNTGVNSEDVESSSIAAAGLVIRDLPLLASSFRCEQSMSDYLAQQNVLGIADMHTRRLTRLLRDKGSQNGAILAGPDAEGEDAEARALEAARAFPGLKGMDLAKVVSCAEPYEWSEGEWTLG 182          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIGO (Carbamoyl-phosphate synthase small chain OS=Neisseria gonorrhoeae GN=carA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.046e-21
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E +E  E   ++G
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNETVAIADIDTRRLTMLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWELG 178          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THISH (Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=carA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.896e-21
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIGI*H 402
            SYA Q V +T PHIGNTGVN +DEES     AGLVIR L    S+WR  E+L +YL    ++ I+++DTR +TR LR+ G+  G +   E   +Q  L  +R +  + G+DL  +VS  E ++  E T Q+G  H
Sbjct:   48 SYARQIVTLTYPHIGNTGVNPEDEESAGVHAAGLVIRDLPPLVSSWRSRESLPDYLTRFGVVAIANIDTRRLTRILREKGAQNGCIMAGEI-DEQAALAAARGFPGLKGMDLAKEVSTAEIYDWTEGTWQLGSGH 181          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNP6 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQ 387
            SY GQ V  T P +GNTGVN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GI  +DTRA+T+ LR  G++ G +ST     ++   E+  +  + G++L+  V+   P+E    T Q
Sbjct:   61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQ 189          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNE7 (Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus (strain PCC 7942) GN=carA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQ 387
            SY GQ V  T P +GNTGVN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GI  +DTRA+T+ LR  G++ G +ST     ++   E+  +  + G++L+  V+   P+E    T Q
Sbjct:   61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQ 189          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PHOLL (Carbamoyl-phosphate synthase small chain OS=Photorhabdus luminescens subsp. laumondii GN=carA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN GVN  D+ES +    GLVIR L + TSN+RC ETL +YL   NI+ I+D+DTR +TR LR+ GS  G +   +    Q  LE ++++  + G+DL  +V+ ++ +  ++ +
Sbjct:   47 SYSRQIVTLTYPHIGNVGVNSVDKESLKVQAQGLVIRDLPLLTSNFRCEETLSDYLKRHNIVAIADIDTRKLTRLLREKGSQNGCIIAGKQIDAQVALEKAQAFPGLEGMDLAKEVTTKQIYPWLQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIMB (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup B GN=carA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E +E  E    +G
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALG 178          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_SYNPX2.900e-2343.44Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_TERTT3.206e-2240.91Carbamoyl-phosphate synthase small chain OS=Teredi... [more]
CARA_SYNY33.206e-2240.94Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_HALER5.468e-2241.91Carbamoyl-phosphate synthase small chain OS=Halomo... [more]
CARA_NEIGO6.046e-2140.15Carbamoyl-phosphate synthase small chain OS=Neisse... [more]
CARA_THISH7.896e-2142.96Carbamoyl-phosphate synthase small chain OS=Thioal... [more]
CARA_SYNP61.347e-2038.76Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_SYNE71.347e-2038.76Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_PHOLL1.347e-2041.41Carbamoyl-phosphate synthase small chain OS=Photor... [more]
CARA_NEIMB1.347e-2040.15Carbamoyl-phosphate synthase small chain OS=Neisse... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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