FC876298
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.250e-25 Identity = 71/197 (36.04%), Postives = 107/197 (54.31%), Query Frame = 1 Query: 76 RPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 RP + + ++G GFIG+HL E++L + + I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD ++ ED S I G I KQRW Y+ +KQL++R+I+A G + GL+FT Sbjct: 314 RPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDASF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFT 488
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24 Identity = 70/190 (36.84%), Postives = 102/190 (53.68%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + ++I LD+ +D I L G R F +I H+ +E IK D+ + L AI TP +Y PL +F + L +V+ C NKR++ ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+NGL FT Sbjct: 324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFT 492
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24 Identity = 70/190 (36.84%), Postives = 102/190 (53.68%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + ++I LD+ +D I L G R F +I H+ +E IK D+ + L AI TP +Y PL +F + L +V+ C NKR++ ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+NGL FT Sbjct: 325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFT 493
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24 Identity = 70/197 (35.53%), Postives = 107/197 (54.31%), Query Frame = 1 Query: 76 RPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 R ++ + ++G GFIG+HL E++L + ++I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A G + GL+FT Sbjct: 315 RSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDANF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFT 489
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24 Identity = 66/190 (34.74%), Postives = 98/190 (51.58%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L E +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +++YC + +KR+I ST EVYG F ED S I G I K RW Y+ +KQL++R+I+A G + GL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLTHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKF---------------FDEDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24 Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 1 Query: 73 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 GR + + ++G GFIG+HL E++L + + + LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL FT Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKNF---DEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFT 488
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 70/190 (36.84%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + + I LD+ +D I L G R F +I H +E IK D+ + L AI TP +Y PL +F + L +V+ C + NKR+I ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 70/198 (35.35%), Postives = 106/198 (53.54%), Query Frame = 1 Query: 73 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 GR + + ++G GFIG+HL E++L + +++ LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S + G + KQRW Y+ +KQL++R+I+A GA+ GL FT Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDQYF---DEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFT 488
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23 Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + ++I LD+ +D I L+ R F +I H +E IK D+ + L AI TP +Y PL +F + L +++ C + NKR+I ST EVYG ED+S + G I KQRW Y+ +KQL++R+I+A G +NGL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDK---------------NFDEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23 Identity = 72/198 (36.36%), Postives = 105/198 (53.03%), Query Frame = 1 Query: 73 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 GR + + ++G GFIG+HL E++L + +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL FT Sbjct: 313 GRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKHF---DEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFT 488 The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bpback to top |