FC876312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1) HSP 1 Score: 320.087 bits (819), Expect = 5.566e-87 Identity = 155/191 (81.15%), Postives = 174/191 (91.10%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIF 613 MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+F Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVF 191
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.437e-58 Identity = 109/189 (57.67%), Postives = 144/189 (76.19%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPI 610 M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK VLVT T +L KIL+ L+I G+++ + +Q+AQLAL+HRQN Q RII FVGSP+K K+ L + ++LKKN VA+DI+NFGE E N++KLEA + VNNND SHL+ VPPGP+ LSD++L +PI Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPI 188
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.016e-49 Identity = 99/191 (51.83%), Postives = 138/191 (72.25%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPI 188
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.016e-49 Identity = 99/191 (51.83%), Postives = 138/191 (72.25%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPI 188
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 6.016e-49 Identity = 99/191 (51.83%), Postives = 138/191 (72.25%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A VL T T D G+IL+ +H ++ G++ GI+VA LALKHRQ K + RII FVGSP++ +K L + ++LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S+PI Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPI 188
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.935e-47 Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPI 610 MVLEAT+I IDNSEWM NGDY P+RF+AQ + ++I K NPEN G+MT+ +VL T T D GK L+ MH L + G GIQ+AQLALKHR+NK Q+QRI+ FVGSPI ++K L + +++KKN+VA+DI++ GE N L+ + A N++DS HLV +PP P LSD++ +PI Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPI 187
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3) HSP 1 Score: 187.193 bits (474), Expect = 5.631e-47 Identity = 99/191 (51.83%), Postives = 136/191 (71.20%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPI 610 MVLEAT++ IDNSE+ RNGD+ +RF+AQ ++ I AK NPENTVG+++ AG RVL T T++ GKILA +H +I G+L++A +Q+AQL LKHRQNK Q QRI+ FV SPI + L + + LKKN+VA+DI+NFGE ++ NTE L+ +AAVNN ++SHL+ V PGP L + + S+PI Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPI 190
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.003e-44 Identity = 99/191 (51.83%), Postives = 128/191 (67.02%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 MVLE+T+IC DNS++ RNGDY P+R Q + NL+C K + NPEN VG+MT++ V VL T TSD G+I + MH ++ GE+NL GI++A L LKHRQ K + RI+VFVGSPI HE+ L ++LKK V +DIV+FG D N E L A + A+N D SHLV VP G + LSD LLS+PI Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPI 188
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.754e-40 Identity = 90/189 (47.62%), Postives = 124/189 (65.61%), Query Frame = 2 Query: 50 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 L+ +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+ VL T T D G+IL+ +H ++ G++ GI VA LALKHRQ + RII FVG+P++ +K L + + LKK V +DI+NFGE +E NTEKL A + +N D SHLV VPPGP +L+D L+S PI Sbjct: 488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPI 673
BLAST of FC876312 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 8.707e-40 Identity = 85/191 (44.50%), Postives = 127/191 (66.49%), Query Frame = 2 Query: 44 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPI 610 M EAT+I +DNS++MRNGD+ P+R QAQ +A LIC +K Q NPENT+G++++A VL T T+D+ KI +H +E G + + I++A LAL+HRQ + Q+ RI+ F+GSPI ++K L + ++LKK V +DI+NFGE +E N +KL + +N D SHL+ V PG L D L+++P+ Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPV 187 The following BLAST results are available for this feature:
BLAST of FC876312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876312 ID=FC876312; Name=FC876312; organism=Citrus clementina; type=EST; length=615bpback to top |