FC876335

Overview
NameFC876335
Unique NameFC876335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876335_ssr30 microsatellite FC876335_ssr30:30..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI194_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.626e-54
Identity = 105/175 (60.00%), Postives = 128/175 (73.14%), Query Frame = 3
Query:  186 MESNLWSNR---LSTASSRRYHHQSRSDLFIXXXXXXXXXXXXLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTPKXDEPLSVQPLSIT 701
            M+SN W N     S++SS     QSRSDL++            L A F+CPFCAEDFDIVGLCCHIDE+HP+EAKNGVCPVC KRVG DIV HIT QH NFFK+QR+RRLRRGG +ST+  L+KELR+ NLQSLLGGSS F SS+N ++DPLLSSF+FN+P  ++  +     +T
Sbjct:    1 MDSN-WINCPSVFSSSSSSSRRCQSRSDLYLGGGYEDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHITTQHANFFKVQRRRRLRRGGYSSTYLALKKELREANLQSLLGGSSSFTSSTNIDSDPLLSSFMFNSPSVNQSANKSATPVT 174          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI197_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.056e-49
Identity = 100/162 (61.73%), Postives = 121/162 (74.69%), Query Frame = 3
Query:  186 MESNLWSNR----LSTASSRRYHHQSRSDLFIXXXXXXXXXXXXLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTP 659
            M+SN W N      S+ SSRRY  QSRSDL++            L A F+CPFCA++FDIVGLCCHID +HP+EAKNGVCPVC K+VG DIV HIT QHGN FK+QR+RRLR+GG +ST+  L+KELR+ NLQS LGGSS F+ SSN ++DPLLSSF+F  P
Sbjct:    1 MDSNSWINCPPVFSSSPSSRRY--QSRSDLYLGDVEGEDD----LKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQS-LGGSSTFIPSSNIDSDPLLSSFMFKPP 155          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI193_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 96/159 (60.38%), Postives = 113/159 (71.07%), Query Frame = 3
Query:  186 MESNLWSNRLSTASSRRYH--HQSRSDLFIXXXXXXXXXXXXLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFV---SSSNTEADPLLSSFI 647
            M+S+ WS+RL++A+ RRY     SRSD F+                F CPFC++ FDIV LCCHIDEDHP+EAKNGVCPVCA RVG D+V+HIT+QH N FK+ RKR+ RRGG  ST S+LR+E  DGN QSL GGSSC V   SSSN  ADPLLSSFI
Sbjct:    1 MDSDSWSDRLASAT-RRYQLAFPSRSDTFLGFEEIDGEEE--FREEFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGGSYSTLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI 156          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI196_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 87/166 (52.41%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  186 MESNLWSNRLSTASSRRYHHQ--SRSDLFIXXXXXXXXXXXXLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTE--ADPLLSSFIFNTPKXDE 671
            M+S+ WS+RL++AS RRY     SRSD F+                + CPFC++ FDIV LCCHIDEDHP++AKNGVCP+CA +V +D+++HIT+QH N FK+ RKR+ RRGG  S  S+L++E  DGN QSL  G+S  VSSS+    ADPLLSSFI  +P  D+
Sbjct:    1 MDSDSWSDRLASAS-RRYQLDFLSRSDNFLGFEEIEGEDD--FREEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--SPMADD 161          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI191_ARATH (Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.358e-37
Identity = 74/129 (57.36%), Postives = 96/129 (74.42%), Query Frame = 3
Query:  318 FLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVS-SSNTEADPLLSSFIFNTPKXDEPLSVQPLSIT 701
            F CPFCAE +DI+GLCCHID++H +E+KN VCPVC+ +VG DIV+HIT+ HG+ FK+QRKR+ R+ G NST SLLRKELR+G+LQ LLG +S   S +S+   DPLLSSFI  T     P   Q  +++
Sbjct:   35 FACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHITLHHGSLFKLQRKRKSRKSGTNSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLLSSFISPTRSQSSPAPRQTKNVS 163          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI192_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.405e-36
Identity = 74/159 (46.54%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  204 SNRLSTASSRRYHHQSRSDLFIXXXXXXXXXXXXLNAM-----FLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRR--GGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTP 659
            S+  S+A++     Q+R DL++            + A      + CPFC EDFD V  CCH+D++H +EAK+GVCP+CA RVG D++ H+TMQHG++FK+QR+RR+R+   G +S  SLLRK+LRDG+LQS LGGSS   +      DP LSS I + P
Sbjct:   11 SSSSSSAAAAARRLQARYDLYMGFDDADAAGVEEVEARGGGEAYNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRRRRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSYVSNPPAAAPDPFLSSLICSLP 169          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI191_ORYSJ (Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  186 MESNLWSNRLSTAS---SRRYHHQSRSDLFIXXXXXXXXXXXXLNAMFLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRG--GPNSTFSLLRKELRDGNLQSLLGG----SSCFVSSSNTEADPLLSSFIFNTPKXD-EPLSVQPLSI 698
            M+S  W +RL+ A    + +  H  R+ +              +   F CP+C ED D+V LC H++E+HP E     CP+C+ ++  D+++HIT+QHG  FK   +RRLRR     +   SLL ++LR+ +LQ LLGG    S+   +++N  ADPLLSSF  + P  D E  S  P+SI
Sbjct:    1 MDSEHWISRLAAAKRFYAAQLGHADRAGM------EEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISI 173          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI193_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  324 CPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGS----SCFVSSSNTEADPLLSSF 644
            CP+C ED DI  LC H++EDHP E     CP+C +++  D+++HITMQHG  FK  R+ R      +   SLL ++LRD  LQ+LLGG         +++N  ADPLLSSF
Sbjct:   64 CPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFKSGRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSF 174          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  318 FLCPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGG--PNSTFSLLRKELRDGNLQSLLGGS--SCFVSSSNTEADPLLSSFIFN 653
            F CP+C ED DI  LC H++++HP E+K   CPVC+ R+  D++ HIT+QH   F++QR  RLRR     N   SL  ++L++  L+ LLG S  S   +++++  D LLSS + N
Sbjct:   60 FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHHRLRRVAVPSNHALSLGGRDLQETYLKVLLGNSSRSSGTNAASSVTDSLLSSLVLN 175          
BLAST of FC876335 vs. ExPASy Swiss-Prot
Match: DI195_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  324 CPFCAEDFDIVGLCCHIDEDHPIEAKNGVCPVCAKRVGTDIVSHITMQHGNFFKIQRKRRLRRGGPNSTFSLLRKELRDGNLQSLLGGSSCFVSSSNTEADPLLSSFIFNTPKXDEPLSVQP 689
            CPFC++D+D+V LC HIDE+H ++A NG+CPVC++RV   +V HIT QH + FK     RL +    S FS   ++     LQSL+        +S +  DPLL SFI+N P   +   VQP
Sbjct:   45 CPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITTQHRDVFK-----RLYKDESYSAFSPGTRKY----LQSLIDEPLSTNHTSKSVLDPLL-SFIYNPPSPKKSKLVQP 156          
The following BLAST results are available for this feature:
BLAST of FC876335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI194_ARATH1.626e-5460.00Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabid... [more]
DI197_ARATH2.056e-4961.73Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabid... [more]
DI193_ARATH8.087e-4660.38Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabid... [more]
DI196_ARATH2.976e-4052.41Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabid... [more]
DI191_ARATH2.358e-3757.36Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thal... [more]
DI192_ORYSJ3.405e-3646.54Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza ... [more]
DI191_ORYSJ1.028e-2437.57Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa sub... [more]
DI193_ORYSJ9.619e-2345.95Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza ... [more]
DI194_ORYSJ9.003e-2142.24Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]
DI195_ARATH3.783e-1943.44Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003E07EF DevOvary1 Citrus clementina cDNA clone C32003E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876335 ID=FC876335; Name=FC876335; organism=Citrus clementina; type=EST; length=701bp
GGCAGCGGAAGTTCGGTGGAAGGAGAGTTTTGTGTTGTGTTGTGTTGCTT
CCTTGGCCTTTCACATCTCATTTGTCTTGGGGGGTTTTGTTTATTAAGAT
CTTTACAATTAAGTCGACAATTTCAAACGAATTTACACGATTGCCACCAC
CACCGTAAAAATCGTTACTTTCTTACACGAAAAAAATGGAGTCGAATTTG
TGGAGCAATCGCCTCTCAACGGCTTCTTCAAGACGCTACCACCACCAGTC
TCGATCTGATCTGTTCATCGGAGGAGGATACGATGAAACGGACGGCGACG
ATGATTTGAATGCGATGTTTCTTTGCCCATTTTGTGCTGAAGATTTCGAC
ATTGTTGGACTTTGTTGCCACATCGATGAGGATCATCCGATTGAAGCTAA
AAACGGGGTATGCCCTGTTTGTGCGAAGAGAGTTGGAACAGATATTGTTA
GCCACATAACCATGCAGCATGGGAATTTTTTTAAAATTCAGCGCAAACGG
AGATTGCGTAGGGGTGGACCAAATTCGACATTTTCTTTACTGAGAAAAGA
ATTACGAGATGGAAACCTACAATCTCTTCTTGGGGGATCTTCATGCTTTG
TTTCTTCCTCCAATACAGAGGCTGATCCATTGTTGTCGTCATTTATATTT
AACACGCCTAAGGNTGATGAACCTCTTAGTGTGCAACCACTTTCGATTAC
T
back to top