FC876338

Overview
NameFC876338
Unique NameFC876338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876338_ssr454 microsatellite FC876338_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.438e-70
Identity = 130/157 (82.80%), Postives = 147/157 (93.63%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLLLK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVY
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVY 157          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.539e-67
Identity = 122/157 (77.71%), Postives = 142/157 (90.45%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MP+ RIA+G PGE SHPD  KAA+AEF SM+IFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L+++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV +WNAVVFEIVMTFGLVY
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVY 157          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.820e-65
Identity = 122/157 (77.71%), Postives = 140/157 (89.17%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MP+ RIA+G PGE SHPD  KAA+AEF S +IFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV + NAVV E+VMTFGLVY
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVY 157          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 7.645e-64
Identity = 122/157 (77.71%), Postives = 137/157 (87.26%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI  IAIG P EA+ PDALKAALAEF S +IFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR ILYWIAQLLGSVVACL+LKF+TGGL   AF LS+GV   NA VFEIVMTFGLVY
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVY 157          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 4.955e-63
Identity = 123/157 (78.34%), Postives = 135/157 (85.99%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI  IA+G+  E  HP ALKAALAEF S +IFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYWIAQLLGS VAC LL+FSTGGL T  F L +GVS W A+V EIVMTFGLVY
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVY 156          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.221e-61
Identity = 120/157 (76.43%), Postives = 133/157 (84.71%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI RIA+G+  E  HP ALKAA AEF S +IFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYW+AQLLGS VAC LL+FSTGG  T  F L +GVS W A+V EIVMTFGLVY
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVY 156          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.154e-58
Identity = 115/158 (72.78%), Postives = 131/158 (82.91%), Query Frame = 3
Query:  108 MPIYRIAIG-TPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MP   IAIG    E  HP+AL+AALAEF S +IFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR ILYWIAQLLGSV AC LL F+TGG    AF LS+GV S NA+VFEIVMTFGLVY
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVY 158          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.634e-56
Identity = 116/157 (73.89%), Postives = 128/157 (81.53%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR I+Y IAQLLGS+VA  LL F T      AF LS GV    A+V EIVMTFGLVY
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVY 156          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 7.172e-54
Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = 3
Query:  108 MPIYRIAIGTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR I+Y IAQLLGS+V   LL F T      AF LS GV    A+V EIVMTFGLVY
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVY 155          
BLAST of FC876338 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 87/154 (56.49%), Postives = 112/154 (72.73%), Query Frame = 3
Query:  132 GTPGEASHPDALKAALAEFFSMIIFVFAGQGSGMAFSKL-----TDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVY 578
            G   EA+HPD+++A LAEF S  +FVFA +GS ++  KL        G +TP GLI  +LAHAFALF AVS   N+SGGHVNPAVTFGA VGG +T +R+I YWIAQLLG+++ACLLL+ +T G+    F L+SGV + N +V EI++TFGLVY
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVY 165          
The following BLAST results are available for this feature:
BLAST of FC876338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
TIP13_ARATH1.438e-7082.80Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ2.539e-6777.71Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE1.820e-6577.71Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ARATH7.645e-6477.71Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ4.955e-6378.34Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE1.221e-6176.43Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ARATH2.154e-5872.78Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR2.634e-5673.89Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA7.172e-5472.61Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ARATH1.038e-4456.49Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionC32003E10EF DevOvary1 Citrus clementina cDNA clone C32003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876338 ID=FC876338; Name=FC876338; organism=Citrus clementina; type=EST; length=578bp
GACCGCTAGGCAATATACAACGGAGCACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAATATCGTTTTTCTTTGACAAAATTTTC
GATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAA
GCCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGATT
ATTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAAC
GGATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTC
ATGCATTTGCCCTATTTGTAGCTGTTTCAGTTGGTGCAAATATTTCTGGG
GGTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACAT
TACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAG
TTGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCG
GCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTCTTTGA
GATTGTGATGACCTTTGGCTTGGTCTAC
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