FC876340

Overview
NameFC876340
Unique NameFC876340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14502 contig Ccv1_Contig14502:19..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876340 vs. ExPASy Swiss-Prot
Match: SNAG_ARATH (Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 121/177 (68.36%), Postives = 141/177 (79.66%), Query Frame = 3
Query:  123 SSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLLRWGL 653
            SSDP K+M KADK+TKL+LTRWSADW+ AT+LYEQAANGFR +   E+AK+A EKAS+GQEM +SPWDAAKHMESAAALA++L  W EVADFYRKASELY ECGR+QP                P+DAIQLYTDAC +LEED ++QMAFD+YRA  NVYIKLEK+ DAATF LR G+
Sbjct:    2 SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQEMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGV 178          
BLAST of FC876340 vs. ExPASy Swiss-Prot
Match: SNAG_DICDI (Gamma-soluble NSF attachment protein OS=Dictyostelium discoideum GN=snpC PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 3
Query:  144 MVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAATFLL 641
            M + DKL+K ++ RW ADW SA   YE+AAN FR AK  + AK  F + S  Q  +   + AAK ME+A+A+AKEL   +E A+   ++ +LY   G S                      I+L TDAC + E DDK+  + D ++   ++ +K +KY +A   ++
Sbjct:   17 MKEGDKLSKTNIFRWKADWDSAALAYEKAANAFRSAKIYDSAKYCFLRLSLCQTHMDVYYLAAKSMENASAMAKELKETQECANLLLESCKLYRTNGNSFQAADTMTKAAKLLEDIDLNQTIKLLTDACELFELDDKDHFSGDTFKQTISMLLKHKKYTEAVDLMI 182          
BLAST of FC876340 vs. ExPASy Swiss-Prot
Match: SNAG_BOVIN (Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 48/173 (27.75%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  111 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 629
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  K +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLKEAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
BLAST of FC876340 vs. ExPASy Swiss-Prot
Match: SNAG_MOUSE (Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 47/173 (27.17%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  111 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 629
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
BLAST of FC876340 vs. ExPASy Swiss-Prot
Match: SNAG_HUMAN (Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 47/173 (27.17%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  111 AAMASSDPHKLMVKADKLTKLSLTRWSADWKSATQLYEQAANGFRVAKNIEQAKIAFEKASQGQEMLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPXXXXXXXXXXXXXXXVPEDAIQLYTDACIMLEEDDKEQMAFDVYRAATNVYIKLEKYADAA 629
            AA   ++  + + KA+K  K    +W  D+ SA   Y +AA  F+ AK  EQAK A  + +   E   + + AAK  E A  + KE+    E      KAS +Y E G                    PE A+QLY     + E +++ + A ++   A+ + ++  ++ +AA
Sbjct:    2 AAQKINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAKQFEQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTPDTAAMALERAGKLIENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAA 174          
The following BLAST results are available for this feature:
BLAST of FC876340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SNAG_ARATH3.375e-6568.36Gamma-soluble NSF attachment protein OS=Arabidopsi... [more]
SNAG_DICDI2.991e-2134.94Gamma-soluble NSF attachment protein OS=Dictyostel... [more]
SNAG_BOVIN8.723e-1327.75Gamma-soluble NSF attachment protein OS=Bos taurus... [more]
SNAG_MOUSE1.943e-1227.17Gamma-soluble NSF attachment protein OS=Mus muscul... [more]
SNAG_HUMAN1.943e-1227.17Gamma-soluble NSF attachment protein OS=Homo sapie... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32003F04EF DevOvary1 Citrus clementina cDNA clone C32003F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876340 ID=FC876340; Name=FC876340; organism=Citrus clementina; type=EST; length=690bp
ATATAAATTTAAAGAAAAAAAATTGGCCGAATCCAGCAGAGTCAAGTGCC
GTGTATGTGATTGAATTGCGCGGAAATCTGAGAAACAGGTGGACTGTTGG
TTCGGAGTGAGCTGCGATGGCGAGTTCCGATCCTCACAAGTTGATGGTCA
AAGCCGACAAATTAACAAAACTCAGTCTTACCAGATGGAGTGCTGATTGG
AAAAGTGCTACTCAATTGTATGAACAGGCTGCTAATGGTTTCAGGGTTGC
CAAAAATATTGAGCAAGCAAAAATTGCATTTGAGAAAGCTTCGCAAGGAC
AAGAGATGCTCTCCTCACCATGGGATGCGGCTAAGCATATGGAGTCTGCT
GCTGCTTTAGCTAAGGAACTACATAATTGGAGGGAAGTTGCTGACTTTTA
TAGAAAAGCATCAGAGTTGTACAATGAATGTGGGAGATCACAACCTGCCT
CAGATGCTCTAGCAAAGGCTGCTCGTGCATTGGAAGATGCTGTGCCAGAG
GATGCTATTCAACTCTATACTGATGCATGCATAATGCTTGAAGAGGATGA
CAAGGAACAAATGGCCTTTGATGTATATCGTGCTGCCACTAATGTTTATA
TAAAGCTTGAGAAGTATGCTGATGCTGCCACTTTTCTGTTGAGATGGGGT
TTGGCNAGCTGATAGTGCAATGCTACCACAGCCAGTGCAA
back to top