FC876342

Overview
NameFC876342
Unique NameFC876342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876342_ssr462 microsatellite FC876342_ssr462:462..471. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876342_ssr163 microsatellite FC876342_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876342_ssr36 microsatellite FC876342_ssr36:36..55. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876342_ssr171 microsatellite FC876342_ssr171:171..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876342 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.359e-28
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 2 
Query:  155 PPSEEEERKKWGTHIMGAPAVPSAHPDNQKAASWNAENRQQIYHQSYVEYSPIDKP-SNNPLEPVIHAFNTWSTKAETIARNIWHNRK 415
            P S   ++KKWGTH+MGAPA P AHPDNQ+AA+W A + QQ  +Q YV YSP++ P +NNPLEPVI  F+TWS KAET+ARN+WHN K
Sbjct:   29 PSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKAETVARNLWHNLK 116
The following BLAST results are available for this feature:
BLAST of FC876342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GEML5_ARATH1.359e-2863.64GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32003F07EF DevOvary1 Citrus clementina cDNA clone C32003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876342 ID=FC876342; Name=FC876342; organism=Citrus clementina; type=EST; length=656bp
GACCCGTGACCGTGAATAACAATAAATCCATCAGAATTTATTTATTTATT
TATTTTTGTTCTCATAGCAATAGCCTCAACCTTCCAGTCAATCGACAACC
AGCATCACCATGACAAGCACACCAGAAAAATTGTCAAGCACTCTGACAGA
AGCTCCACCTTCAGAAGAAGAAGAAAGAAAGAAATGGGGTACCCATATCA
TGGGAGCGCCAGCGGTGCCTAGTGCTCACCCAGACAATCAAAAGGCAGCC
TCATGGAACGCCGAAAACCGCCAGCAAATCTATCATCAGTCTTATGTCGA
GTACTCTCCTATCGACAAGCCAAGTAACAACCCTTTGGAGCCTGTAATTC
ACGCGTTCAATACTTGGAGCACCAAAGCTGAGACCATTGCCCGCAACATC
TGGCATAATCGTAAGTTACTTTCCTGTCCGCTAATTATATATCAAACGCT
ATGCAGCTGTAATATATATATGATTCGACCAATACATCCATATTGATACA
TATTAAACGCTATGCAGCTGTAATATACATATGATTCGACCAATACATCC
ATATTGATAATATAAATTTGCAGTGAAAACCGGTCCCTCTGTGTCGGAAG
CTGCATGGGGGAAGGTGAATTTGACAGCGAAAGCAATACCAGAGGGCGGA
TTTGAG
back to top