FC876345

Overview
NameFC876345
Unique NameFC876345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:811..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 5.248e-96
Identity = 172/183 (93.99%), Postives = 179/183 (97.81%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVV+TFS+YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.205e-94
Identity = 168/183 (91.80%), Postives = 178/183 (97.27%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVV+TFS+YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.205e-94
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVV+TFS YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 3.761e-94
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG+LKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVV+TFS YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.094e-93
Identity = 167/183 (91.26%), Postives = 175/183 (95.63%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTS IA+KF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVV+TF  YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 2.438e-93
Identity = 165/183 (90.16%), Postives = 178/183 (97.27%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTS IA+KF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVV+TF++YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 4.159e-93
Identity = 165/183 (90.16%), Postives = 176/183 (96.17%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIG  PVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVV+TF++YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGIVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 2.064e-92
Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVV+TF+ YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 6.005e-92
Identity = 164/183 (89.62%), Postives = 175/183 (95.63%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETGVLKPGMVVTF P+GLTTEVKSVEMHHE+L EA PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTS IA+KF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVV+TFS+YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
[Close]
BLAST of FC876345 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 6.005e-92
Identity = 163/183 (89.07%), Postives = 175/183 (95.63%), Query Frame = 1 
Query:    1 KIGGIGTAPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSPIALKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVDTFSDYPPLGRFAVRDMRHTAAVGV 549
            KIGGIGT PVGRVETG++KPGMVVTF P+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTS IA+KFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVV+TFS+YPPLGRFAVRDMR T AVGV
Sbjct:  243 KIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
The following BLAST results are available for this feature:
BLAST of FC876345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_ORYSJ5.248e-9693.99Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC2.205e-9491.80Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MAIZE2.205e-9491.80Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES3.761e-9491.80Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA1.094e-9391.26Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOLLC2.438e-9390.16Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_VICFA4.159e-9390.16Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_WHEAT2.064e-9290.71Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SOYBN6.005e-9289.62Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH6.005e-9289.07Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32003F10EF DevOvary1 Citrus clementina cDNA clone C32003F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876345 ID=FC876345; Name=FC876345; organism=Citrus clementina; type=EST; length=551bp
AAGATTGGTGGCATTGGAACCGCCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCG
GGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAA
GCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTG
CCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATTGGA
AATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCCGATTGCCCTCAA
GTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGACGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGATACCTTCTCCGATTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCACACTGCTGCTGTGGGTGTTA
T
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