FC876349

Overview
NameFC876349
Unique NameFC876349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig153 contig Ccv1_Contig153:16..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876349 vs. ExPASy Swiss-Prot
Match: FABI_BRANA (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 7.976e-52
Identity = 114/187 (60.96%), Postives = 133/187 (71.12%), Query Frame = 1 
Query:  133 MAATAACS-LQMAAVKPCISSSHRXXXXXXXXXXXXXXXXXWTKLSSASHISS-GQPFLRSFTSSSVKFDKVVTRAMAESSTNKPISGLPIDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDESRVLPDGSLMEITKIYPLDAIYDKLEDVPEDVKSNSAIQG 687
            MAATAA S LQMA  +P IS++                     K++   H+S+ G     S   +S K     T+AM+ESS +K  SGLPIDL+GKRAFIAG+ADDNGYGWA+AKSLAAAGAEILVGTWVPALNIFETSLRRGKFD+SRVLPDGSLMEI K+YPLDA++D  EDVPEDVK+N    G
Sbjct:    1 MAATAAASSLQMATTRPSISAASSKARTYVVGANPRNAY----KIACTPHLSNLGCLRNDSALPASKKSFSFSTKAMSESSESKASSGLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPEDVPEDVKANKRYAG 183

HSP 2 Score: 22.7126 bits (47), Expect = 7.976e-52
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3 
Query:  663 KIKQRYSGSSXWT 701
            K  +RY+GSS WT
Sbjct:  176 KANKRYAGSSNWT 188
The following BLAST results are available for this feature:
BLAST of FC876349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FABI_BRANA7.976e-5260.96Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
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Properties
Property NameValue
Genbank descriptionC32003G03EF DevOvary1 Citrus clementina cDNA clone C32003G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876349 ID=FC876349; Name=FC876349; organism=Citrus clementina; type=EST; length=702bp
GAGAGGAACCCCCCCAAAAGAGAAAGAAAAAAGCCATTTTTTTTAACTCA
ATACTTCTCTCTTTTCCTCACATTGGCGCTTCCAATCGTTCAAAGGTATT
TATTTTCCTCTGCAAGAGTTGGTGCATTGAAAATGGCGGCAACAGCAGCT
TGTAGCCTTCAAATGGCAGCAGTAAAGCCATGCATTTCCTCTTCTCACAG
AGGTGTCAAAGCAGGTGTTGCAGTTGTTGGTGGCAACTCTAAGGGGGCAT
CGTGGACCAAGCTTTCTAGTGCTTCTCACATATCATCTGGGCAACCTTTC
CTGCGGAGTTTTACATCATCTTCAGTAAAATTTGATAAGGTTGTAACAAG
GGCAATGGCTGAATCTAGCACTAACAAGCCTATTTCCGGATTGCCTATTG
ATTTGAAAGGTAAGAGGGCATTTATTGCTGGTGTAGCTGACGACAACGGA
TATGGTTGGGCTATAGCAAAATCTCTTGCTGCTGCAGGAGCTGAAATTTT
GGTTGGAACATGGGTTCCTGCTTTGAACATTTTTGAAACCAGTCTGCGAC
GTGGAAAATTTGATGAATCTCGTGTGTTGCCAGATGGTTCTTTGATGGAA
ATCACTAAAATATATCCCCTAGATGCTATCTATGACAAGCTTGAGGATGT
GCCTGAGGATGTAAAATCAAACAGCGCTATTCAGGGTCCTCTAANTGGAC
TG
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