FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.895e-47
Identity = 97/163 (59.51%), Postives = 111/163 (68.10%), Query Frame = 1
Query:  178 MAITTTRSLSVTPVTRRSATPINXXXXXXXXXXXXXXXXXNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            M I    ++SV P +RR +   +                     K PS RVSA++       E  S  SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQA KLCDRNFG+GADGVIFAM GVN TDY MRIFNSDGSEPEMCGNG RCFARFIA
Sbjct:    1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGFFEK-EYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIA 162          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41
Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 1
Query:  316 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI+VDNR+S  P++TPE+A KLCDRNFG+GADGVIF M GVN  DYTMRIFNSDGSEPEMCGNG RCFARFIA
Sbjct:   38 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 154          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.447e-41
Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 1
Query:  316 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI++DNR+S  P++TPE+A KLCDRNFG+GADGVIF M GVN  DYTMRIFNSDGSEPEMCGNG RCFARFIA
Sbjct:   41 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIA 157          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.300e-34
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F KYHGLGNDFILVDNR STEP +TP+QA++LCDR+FGIGADGVIFA+ G   TDYTMRIFNSDGSEPEMCGNG RC A+F+A
Sbjct:    3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+ G  D+DY MRIFNSDGSEPEMCGNG RC A+F++
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLS 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+ G  D+DY MRIFNSDGSEPEMCGNG RC A+F++
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLS 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.217e-34
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            F KYHGLGNDFIL+DNR+  +P +TPEQA +LCDRNFGIGADGVIFA+ GV  TDYTMRIFNSDGSEPEMCGNG RC A+FIA
Sbjct:    5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.451e-33
Identity = 65/85 (76.47%), Postives = 74/85 (87.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+ G N TDYTMRIFNSDGSEPEMCGNG RC A F+A
Sbjct:    3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.460e-33
Identity = 64/85 (75.29%), Postives = 72/85 (84.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+ G N TDYTMRIFNSDGSEPEMCGNG RC A F+A
Sbjct:    3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLA 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.539e-32
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            + F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF + G + TDY MRIFNSDGSEPEMCGNG RC A+FIA
Sbjct:    3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQMRIFNSDGSEPEMCGNGIRCLAQFIA 87          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ARATH3.895e-4759.51Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ2.445e-4169.49Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI5.447e-4168.64Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_SYNY31.300e-3478.82Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF_SYNP61.697e-3476.47Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE71.697e-3476.47Diaminopimelate epimerase OS=Synechococcus elongat... [more]
DAPF_TRIEI2.217e-3479.52Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF_NOSP72.451e-3376.47Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF2_ANASP5.460e-3375.29Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]
DAPF_CYAP73.539e-3270.59Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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