FC876362

Overview
NameFC876362
Unique NameFC876362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13487 contig Ccv1_Contig13487:22..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876362 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.106e-55
Identity = 104/186 (55.91%), Postives = 134/186 (72.04%), Query Frame = 3
Query:   78 WVSIFILFTTLPFTISQSXXXXXXXXXXXNTCNGVFLSYTYNSGSKLPPDNPKHHAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKECN 635
            W+ +  LFT +  T SQ            + CNGVF+SYTY +G+K+ P++ K+  YRFES +TVLNNG ++LK W+ FV F H EILVSA+NAVL DG+S PASV NGT+FAGFP +DLKTA+MTAGD+TQM+ +V++VGTQFGV    VP+PKNI+L NDG+ C   T+QG + L VCCT   N
Sbjct:   10 WILLSSLFTAIQLTSSQRNTPPPRSKDA-DLCNGVFVSYTYLTGTKIKPNDTKNQPYRFESEITVLNNGRDELKSWQVFVKFAHREILVSATNAVLSDGSSLPASVENGTIFAGFPSADLKTAIMTAGDVTQMEARVELVGTQFGVAPPSVPLPKNITLVNDGWSCPKPTQQGSNVLQVCCTPNPN 194          
BLAST of FC876362 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.705e-52
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 3
Query:   93 ILFTTLPFTISQSXXXXXXXXXXX----NTCNGVFLSYTYNSGSKLPPDNPKHHAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCC 620
            +L  ++P T SQS               + CNGVF+SYT+  GSK+PP++  +  YRFES +TVLN+G ++LK WR FV F H EILVSASNAVL DG+S P SV NGTVFAG+P SDLK+A+ TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC
Sbjct:   16 LLIVSIPLTSSQSDANTTNPSPSPPSDSDLCNGVFVSYTHTKGSKIPPNDTANQPYRFESVITVLNHGRDELKSWRVFVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCC 195          
BLAST of FC876362 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.834e-49
Identity = 94/189 (49.74%), Postives = 126/189 (66.67%), Query Frame = 3
Query:   87 IFILFTTLPFTISQSXXXXXXXXXXX------NTCNGVFLSYTYNSGSKLPPDNPKHHAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKECN 635
            + +LFT  P ++SQ                  + CNG+FLSY +  G K+PP++     YRFES LTVLNNG E+LK+WR FVGFQH EIL+SA++A++ +G   PA VGNGT+F G+P+SDLKTA+ TAGDL QM  ++++VGTQF V    VP+P NISL N+G+LC   T Q K EL  CC ++ +
Sbjct:   11 VLLLFTVTPPSMSQLPPTIMVPAPAPAPISPSDLCNGIFLSYDFILGRKIPPNDTADQPYRFESVLTVLNNGREELKEWRVFVGFQHNEILISATDALIVNGTELPALVGNGTIFGGYPVSDLKTAIQTAGDLKQMTAEIELVGTQFMVAPPAVPLPSNISLVNEGWLCPVPTLQSKRELTTCCIRDAS 199          
BLAST of FC876362 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 68/154 (44.16%), Postives = 97/154 (62.99%), Query Frame = 3
Query:  171 CNGVFLSYTYNSGSKLPPD--NPKHHAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTK 626
            CNG+F+SY + S  +  P   N    ++ F+ST  ++N G E+LK W+ F+GF+H+E++VSA+ A   DG+ +P    NGT F G P  DLKT++ TAGD TQ+   ++I GT FGV     PMP+ I L NDG+ C    R+G S +HVCC +
Sbjct:   58 CNGIFMSYNFGSREREYPHVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIVSATGATPMDGD-YPLDASNGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKAVTPMPRTIKLTNDGWECPAAKRKGGS-MHVCCKR 209          
BLAST of FC876362 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.258e-32
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 3
Query:  171 CNGVFLSYTYNSGSKLPP--DNPKHHAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTK 626
            CNGV++SY+     KL P   N    A+ F+ST  ++N G+E++K W+ FVGF H EI+VSA+ AV  DG+ FP    NGT F G   +DLKT+++TAGD TQ+   ++I GT FG      PMPK+I L NDG+ C   T +G   + VCC +
Sbjct:   48 CNGVYMSYSSGGREKLYPRTTNATAQAWSFKSTAMIVNTGIEEVKGWQMFVGFHHREIIVSATGAVSSDGD-FPVDATNGTTFIGSQNTDLKTSILTAGDYTQISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQCPAATSKG-GTMQVCCKR 199          
The following BLAST results are available for this feature:
BLAST of FC876362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COBL8_ARATH6.106e-5555.91COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ARATH3.705e-5255.56COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH3.834e-4949.74COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH6.570e-3344.16COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
CBL11_ARATH4.258e-3245.45COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
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Properties
Property NameValue
Genbank descriptionC32003H05EF DevOvary1 Citrus clementina cDNA clone C32003H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876362 ID=FC876362; Name=FC876362; organism=Citrus clementina; type=EST; length=640bp
GAGAGTCTCTCAAAGCCTACTTTCAAAATCCTTTCGAACAAACAAAATAA
AAAAACTCAAAAGCCATGAGTTTGAACTGGGTTTCAATTTTCATCTTATT
TACAACGCTGCCCTTTACGATCTCTCAATCACCAGCAACCCCAGAAGCGC
CAGCACCGGCAGCCAACACCTGCAACGGCGTTTTCTTATCGTACACCTAC
AACTCCGGATCGAAGCTCCCGCCCGACAACCCGAAGCACCATGCGTATCG
GTTCGAGTCAACGCTGACTGTTCTGAACAACGGGCTGGAACAGCTGAAGC
AATGGAGGGCTTTTGTGGGGTTTCAGCACGAGGAGATTTTGGTGTCTGCG
TCGAACGCGGTGTTGTTTGATGGGAATAGCTTCCCTGCTAGTGTGGGAAA
CGGGACCGTTTTTGCAGGGTTTCCGATGTCTGACTTGAAGACGGCGGTGA
TGACGGCGGGTGACTTGACTCAGATGCAGGTCCAGGTTAAGATTGTGGGG
ACTCAGTTTGGTGTTGGGTTACGTGATGTGCCCATGCCGAAGAATATTAG
CCTTGCTAATGATGGGTTCTTGTGCTCTCCTGTGACCAGGCAAGGTAAGA
GTGAGCTGCACGTATGCTGCACGAAAGAATGCAATGCTAA
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