FC876367

Overview
NameFC876367
Unique NameFC876367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15126 contig Ccv1_Contig15126:26..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.206e-73
Identity = 143/167 (85.63%), Postives = 147/167 (88.02%), Query Frame = 1
Query:  169 MTPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            M PEPED IKDEKNPRPLDEDDIALLKTYGLGPYST IKKAEKE+KD+AKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRN  +    L  KID  V       +PDVTY
Sbjct:    1 MAPEPED-IKDEKNPRPLDEDDIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 166          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.962e-71
Identity = 137/167 (82.04%), Postives = 146/167 (87.43%), Query Frame = 1
Query:  169 MTPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            M PEPED+I +EKNPRPLDEDDIALLKTYGLGPYSTSIKK EKEIK+MAKK+NDLCGIKESDTGLA PSQWDLVSDKQMMQEEQPLQVARCTKII+PN++DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRN  +    L  KID  V       +PDVTY
Sbjct:    1 MAPEPEDDIMNEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 167          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.276e-70
Identity = 138/167 (82.63%), Postives = 144/167 (86.23%), Query Frame = 1
Query:  169 MTPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            M  E ED++KDEKNPRPLDEDDIALLKTYGLGPYS SIKK EKEIKDM+KKVNDL GIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPN+EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRN  +    L  KID  V       +PDVTY
Sbjct:    1 MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 167          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.772e-69
Identity = 135/167 (80.84%), Postives = 143/167 (85.63%), Query Frame = 1
Query:  169 MTPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            M  + EDEI+DEKNPRPLDEDDIALLKTYGLGPYS  IKK EKEIKD+AKK+NDLCGIKESDTGLA PSQWDLVSDKQMMQEEQPLQVARCTKII+PN+EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRN  +    L  KID  V       +PDVTY
Sbjct:    1 MVRDIEDEIRDEKNPRPLDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTY 167          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 193.356 bits (490), Expect = 9.270e-49
Identity = 102/162 (62.96%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            ++E KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRN  + +  L  KID  V       +PDVTY
Sbjct:   13 KEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 174          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.270e-49
Identity = 101/162 (62.35%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            EDE+ +E  P  LDE DIALLK+YG+GPYS SI+  E++IK M  KVN+LCGIKESDTG+  PSQWDLV DK    EE PLQVARCTKII+    +AKY+I VKQIAKFVV LGDK+SPTD+EEG+RVGVDRN  +    L  KID  V       +PD+TY
Sbjct:    8 EDELLNETAPVALDEGDIALLKSYGVGPYSKSIRILEEDIKKMTSKVNELCGIKESDTGIGPPSQWDLVVDKTSAHEEPPLQVARCTKIIDVGKPNAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITY 169          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.211e-48
Identity = 104/162 (64.20%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRN  + +  L  KID  V       +PDVTY
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 174          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.211e-48
Identity = 104/162 (64.20%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRN  + +  L  KID  V       +PDVTY
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 174          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.211e-48
Identity = 104/162 (64.20%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRN  + +  L  KID  V       +PDVTY
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 174          
BLAST of FC876367 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.211e-48
Identity = 104/162 (64.20%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  184 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNNIKFN-SLASKID-QVYHDDCGREPDVTY 663
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKIIN +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRN  + +  L  KID  V       +PDVTY
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 174          
The following BLAST results are available for this feature:
BLAST of FC876367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PRS7_PRUPE9.206e-7385.6326S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_ORYSJ2.962e-7182.0426S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7_SPIOL4.276e-7082.6326S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7A_ARATH2.772e-6980.8426S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_MOUSE9.270e-4962.9626S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_DICDI9.270e-4962.3526S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_RAT1.211e-4864.2026S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_MACFA1.211e-4864.2026S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN1.211e-4864.2026S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN1.211e-4864.2026S protease regulatory subunit 7 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32003H11EF DevOvary1 Citrus clementina cDNA clone C32003H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876367 ID=FC876367; Name=FC876367; organism=Citrus clementina; type=EST; length=666bp
GTCACCACAGATCGGATCCTACCACCTCAAGGAAACTCGTGCGGTCGTGC
CTCTCTTTCAAGCCAAACACCTCGACGACACCGTTTCCTCAGAAAGACCT
CGCCGACGGTTTTCAACGCCCAATCTTCCTCTCTAGAACTTGCAAGCAAT
CAGGAAATTCATAAAACAATGACACCCGAGCCGGAAGATGAGATCAAGGA
CGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCTTAAAA
CATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGAAGGAG
ATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAGGAATC
TGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGATAAGC
AGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCAAGATT
ATCAATCCAAATTCTGAAGATGCTAAATATGTAATAAATGTTAAGCAAAT
TGCCAAGTTCGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGATATTG
AAGAAGGGATGCGTGTGGGGGTTGACCGGAATAATATCAAATTCAATTCC
CTTGCCTCCAAAATTGATCAAGTGTACCATGATGACTGTGGAAGAGAACC
AGATGTGACATATATG
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