FC876373

Overview
NameFC876373
Unique NameFC876373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:51..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 2.951e-84
Identity = 150/197 (76.14%), Postives = 169/197 (85.79%), Query Frame = 3
Query:   60 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTK 650
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDV V I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTK 197          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 62/217 (28.57%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++     +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 62/217 (28.57%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++     +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 62/217 (28.57%), Postives = 104/217 (47.93%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++     +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 61/237 (25.74%), Postives = 110/237 (46.41%), Query Frame = 3
Query:   21 QQHTLSLITQFRKMAV---EICVKAAVGAP---DILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            Q+H ++L  + +  A+    I +K  + A    + +G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D +     +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  449 QEHDITLFVKVKLTALGCSRIAIKKYLRAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 685          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 60/217 (27.65%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++     +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++     +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D +     +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGIWRYLNNAYARDEFINT 618          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.307e-15
Identity = 59/216 (27.31%), Postives = 97/216 (44.91%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D +     +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGIWRYLNNAYARDEFTNT 593          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 58/216 (26.85%), Postives = 97/216 (44.91%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D +     +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y    +A + F  T
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNT 577          
The following BLAST results are available for this feature:
BLAST of FC876373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DHAR1_ARATH2.951e-8476.14Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN8.186e-1828.57Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT1.396e-1728.57Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE1.396e-1728.57Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC6_HUMAN6.930e-1725.74Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC1_BOVIN6.930e-1727.65Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT1.544e-1628.57Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_RABIT4.492e-1627.31Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC6_RAT1.307e-1527.31Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE1.707e-1526.85Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC32004A06EF DevOvary1 Citrus clementina cDNA clone C32004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876373 ID=FC876373; Name=FC876373; organism=Citrus clementina; type=EST; length=653bp
GGTTGTCGGGTTTTCACTAACAGCAACATACACTCTCTCTGATCACTCAA
TTCCGCAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAAG
CCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGATGTGACTGTTAGAATTATTG
AGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCT
GTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAAG
GCT
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