FC876375

Overview
NameFC876375
Unique NameFC876375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876375_ssr350 microsatellite FC876375_ssr350:350..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_SCHPO (Probable ornithine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC21C3.08c PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 66/91 (72.53%), Postives = 81/91 (89.01%), Query Frame = 1
Query:  382 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            LE EY+AHNYHP+P+ FS+AKG+ +WDPEG +YLDFLSAYSAVNQGHCHPKI++AL EQA+++TLSSRAFYNDKF  FA+ +T  FGY+MV
Sbjct:   19 LENEYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYFGYEMV 109          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_EMENI (Ornithine aminotransferase OS=Emericella nidulans GN=otaA PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 64/93 (68.82%), Postives = 80/93 (86.02%), Query Frame = 1
Query:  376 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            I  E +++AHNYHP+P+VF++A+G+S+WDPEG  YLDFLSAYSAVNQGHCHPK++ AL +QA +LTLSSRAFYND FP FAE +T  FG+DMV
Sbjct:   22 IQAENDFAAHNYHPLPVVFARAQGTSVWDPEGRHYLDFLSAYSAVNQGHCHPKLVAALVDQASRLTLSSRAFYNDVFPKFAEMVTKYFGFDMV 114          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_YEAST (Ornithine aminotransferase OS=Saccharomyces cerevisiae GN=CAR2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.895e-32
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  376 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            I  E +YSAHNYHP+P+VF +AKG+ +WDPEG  YLDFLSAYSAVNQGHCHP I+KAL EQA+ LTLSSRAF+ND +  FA+ +T  FG++ V
Sbjct:   12 IEWENKYSAHNYHPLPVVFHKAKGAHVWDPEGKLYLDFLSAYSAVNQGHCHPHIIKALTEQAQTLTLSSRAFHNDVYAQFAKFVTEFFGFETV 104          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_DICDI (Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.671e-29
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            LI +E E++AH YHP+P+VF +A G  +WD E  +Y DFLSAYSAVNQGH HPKI+ AL  QA+K  LSSRAFYN+ FP +A+ +T  FGY+MV
Sbjct:   16 LIEMESEFAAHTYHPIPVVFKKASGVHVWDVEEKQYFDFLSAYSAVNQGHSHPKIVSALITQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMV 109          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_DROAN (Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae GN=Oat PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.165e-28
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            E +Y AHNYHP+P+  S+ +G  +WD EG +Y D+LSAYSAVNQGHCHPKI+KAL EQA KL L+SRAFY+D    + E +T +FG+D V
Sbjct:   42 ENKYGAHNYHPLPVALSKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVKALTEQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKV 131          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_HUMAN (Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            EY+Y AHNYHP+P+   + KG  +WD EG KY DFLS+YSAVNQGHCHPKI+ AL+ Q +KLTL+SRAFYN+    + E +T +F Y  V
Sbjct:   47 EYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKV 136          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_EXISA (Ornithine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rocD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L  ++ AHNYHP+PIV S+AKG  + DPEGN+Y+D LSAYSAVNQGHCHPKI++AL++QA+K+TL+SRAFYND+   F +++ ++    MV
Sbjct:    7 VIELTEKFGAHNYHPLPIVISEAKGIWVTDPEGNRYMDMLSAYSAVNQGHCHPKIIQALKDQADKITLTSRAFYNDQLGRFYDKVVTLTKKQMV 100          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BOVIN (Ornithine aminotransferase, mitochondrial OS=Bos taurus GN=OAT PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.710e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            E +Y AHNYHP+P+   + KG  +WD EG KY DFLSAYSAVNQGHCHPKI+ AL+ Q +KLTL+SRAFYN+    + E +T +F Y  V
Sbjct:   47 ESKYGAHNYHPLPVALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVDALKSQVDKLTLTSRAFYNNVLGEYEEYVTKLFNYHKV 136          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BACHD (Ornithine aminotransferase OS=Bacillus halodurans GN=rocD PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.710e-27
Identity = 54/88 (61.36%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  391 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +Y A NYHP+PIV S+AKG  + DPEG KYLD LSAYSAVNQGHCHPKI++AL++QA+K+TL+SRAF+ND+   F E+++ + G +M+
Sbjct:   14 KYGAKNYHPLPIVISEAKGVWVKDPEGRKYLDMLSAYSAVNQGHCHPKIIQALKDQADKITLTSRAFHNDQLAPFYEKVSKLTGKNML 101          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BREBN (Ornithine aminotransferase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rocD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.740e-27
Identity = 53/88 (60.23%), Postives = 75/88 (85.23%), Query Frame = 1
Query:  391 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            ++ AHNYHP+PIV S+A+G  + DPEGNKYLD LSAYSA+NQGH HP+I++AL++QA+K+TL+SRAFYND+   F E+L+++ G +M+
Sbjct:   13 KFGAHNYHPLPIVISKAEGVWVHDPEGNKYLDMLSAYSALNQGHRHPRIIQALKDQADKVTLTSRAFYNDQLGEFYEKLSAVTGKEMI 100          
The following BLAST results are available for this feature:
BLAST of FC876375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
OAT_SCHPO8.789e-3672.53Probable ornithine aminotransferase OS=Schizosacch... [more]
OAT_EMENI7.440e-3568.82Ornithine aminotransferase OS=Emericella nidulans ... [more]
OAT_YEAST5.895e-3266.67Ornithine aminotransferase OS=Saccharomyces cerevi... [more]
OAT_DICDI4.671e-2960.64Probable ornithine aminotransferase OS=Dictyosteli... [more]
OAT_DROAN5.165e-2860.00Ornithine aminotransferase, mitochondrial OS=Droso... [more]
OAT_HUMAN8.809e-2858.89Ornithine aminotransferase, mitochondrial OS=Homo ... [more]
OAT_EXISA8.809e-2858.51Ornithine aminotransferase OS=Exiguobacterium sp. ... [more]
OAT_BOVIN5.710e-2758.89Ornithine aminotransferase, mitochondrial OS=Bos t... [more]
OAT_BACHD5.710e-2761.36Ornithine aminotransferase OS=Bacillus halodurans ... [more]
OAT_BREBN9.740e-2760.23Ornithine aminotransferase OS=Brevibacillus brevis... [more]

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Properties
Property NameValue
Genbank descriptionC32004A08EF DevOvary1 Citrus clementina cDNA clone C32004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876375 ID=FC876375; Name=FC876375; organism=Citrus clementina; type=EST; length=655bp
GGCATTGGGGATTGGTTCACTGAGTTGAATGAATGGGAATGGATTTTTGC
TTTGGGACGTGTACCTTTACGGCAACCATGACGTAAAAGTCGTAAGCTAA
ACGGAACATAACAAAAACAAATATGGAAATTTGACGTCCTGCTTTCGTTC
TTATCTATCATTAGCACACTTCAACGTTGGGTTATCCTAGGATCCAACTG
AACGTAATTAGATTGGATTATCAAAAATTACAGTGATATTATTGTTATTA
TGAATTCAATGGGTGCAACAAGAAGAAATTTGCATTGCTTATTGAGCAGA
GTATGCAGGAAGAGAAGTTATGGTGCTCAACCTCAAGGAGGCACTTCTCC
TTCTTCTTCTTCTTCTCAACAACTCATCAATTTGGAGTATGAATACAGTG
CCCACAATTACCACCCAGTTCCGATTGTATTCTCTCAAGCAAAAGGGTCA
TCCATATGGGATCCAGAGGGCAATAAATATCTGGATTTTCTCTCAGCTTA
CTCTGCAGTTAATCAGGGACATTGTCATCCAAAAATCATGAAAGCATTAC
AAGAGCAGGCAGAAAAGCTTACTCTCAGCTCTAGAGCCTTCTATAATGAT
AAATTTCCAGTATTTGCAGAGCGTCTTACAAGCATGTTTGGGTATGATAT
GGTAC
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