FC876390

Overview
NameFC876390
Unique NameFC876390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10345 contig Ccv1_Contig10345:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA2_ARATH (Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=LYSA2 PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.566e-112
Identity = 198/222 (89.19%), Postives = 209/222 (94.14%), Query Frame = 3
Query:    3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 668
            K +DGFLYCE  +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALEG+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR
Sbjct:   74 KSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALEGVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIR 295          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA1_ARATH (Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 2.672e-112
Identity = 196/222 (88.29%), Postives = 211/222 (95.05%), Query Frame = 3
Query:    3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 668
            K +DGFLYCE  +V+D+ME+VE+RPFYLYSKPQITRN+EAYK+ALEG++S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR
Sbjct:   69 KSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGVSSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIR 290          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_ORYSJ (Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza sativa subsp. japonica GN=LYSA PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.772e-101
Identity = 175/221 (79.19%), Postives = 198/221 (89.59%), Query Frame = 3
Query:    9 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            ADG LYCE VRV+D M   E+ PFYLYSKPQ+ RN  AY+ ALEGL SI+GYA+KANNN ++L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ GVFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQWFLD++K++ N++ LVG HCHLGSTITKVDIFRDAA LMVNY+D+IRA
Sbjct:   76 ADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYAVKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESGVFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQWFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRA 296          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_PSEAE (Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa GN=lysA PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.509e-34
Identity = 82/219 (37.44%), Postives = 127/219 (57.99%), Query Frame = 3
Query:   12 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665
            D  L+ E V +  + E     P Y+YS+  I     AY  AL G+  ++ +A+KAN+N  +L  L +LG G  +VS  EL   L AG DP K +F+G GK  +D+  A + GV   NV+S  +LE +   +   G K  V LR+NPDVD Q HPY++TG K +KFGI  ++ +  + A  A  + L+++G  CH+GS +T+++ F DA   ++  +D++
Sbjct:    8 DAELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVKANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVHCFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAE-AVYARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRL 224          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_AQUAE (Diaminopimelate decarboxylase OS=Aquifex aeolicus GN=lysA PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 80/219 (36.53%), Postives = 130/219 (59.36%), Query Frame = 3
Query:   12 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665
            DG L+ E V ++++ +T    P Y+YS   I    EAY++A    +++I YA+KAN N  +++ L +LG GA +VSG EL LA +AG  P + ++ G GK  ++L  A    + + NV+S  +L+ +   +   GKK  + +R+NPDVDP+ HPY+ATG + SKFG+   + Q   +      N L++VG HCH+GS I  +  +R+A   +V+  + +
Sbjct:   15 DGELFIEGVSLKELAQTFGT-PLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESL 229          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMB (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B GN=lysA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 84/224 (37.50%), Postives = 123/224 (54.91%), Query Frame = 3
Query:   21 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            L+CE V    + E     P Y+YS+  +T   E Y+ A   LN ++ YA+KAN N  I++H   LG G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK   V LRINPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A
Sbjct:    3 LFCEQVPYPRLAEAFGT-PLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIA------YADALEAYHYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA 218          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_NEIMA (Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A GN=lysA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31
Identity = 82/224 (36.61%), Postives = 124/224 (55.36%), Query Frame = 3
Query:   21 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            L+CE V    + E     P Y+YS+  +T   E Y+ A   L+ ++ YA+KAN N  I++H   LG G  +VSG EL   L AG D  K IF+G GK   ++  A   GV   N++S  +++ I   +   GK  +V LR+NPDVD + HPY++TG K +KFGI       + DA++A+      PN LK++G  CH+GS +T +    +A   ++  +D + A
Sbjct:    3 LFCEQVPYPRLAEAFGT-PLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIKHFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIA------YADALEAYRHAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAA 218          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_ARCFU (Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus GN=lysA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31
Identity = 81/210 (38.57%), Postives = 119/210 (56.67%), Query Frame = 3
Query:    9 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL-----VGAHCHLGSTITKVDIF 623
            +DG L  E V+V +++      P Y+ S+  + RN+EAYK+A    N  + YA+KANNN  ++  +   G GA + S  EL LA  AGF     +FNGN K  +++ +    GV  +VDS  +L  I   ++  GK+V +  R+NPDVDP+ HP +ATG + SKFGI +E ++      +A+   LKL     VG HCH+GS I  +  F
Sbjct:    5 SDGILTVEGVKVTEIVRETGT-PVYVTSRALLERNLEAYKKAFS--NEGLLYAVKANNNLALMRIIASHGFGADVFSDGELYLASLAGFRKDMVLFNGNSKSRKEIEMGVTAGVKFSVDSLDELRTISKIAKEVGKEVEIAFRVNPDVDPKTHPKIATGLRESKFGIPHEMVR------EAYEMALKLDGVVPVGIHCHIGSQILDLSPF 205          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_VIBCH (Diaminopimelate decarboxylase OS=Vibrio cholerae GN=lysA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 79/221 (35.75%), Postives = 125/221 (56.56%), Query Frame = 3
Query:   12 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            DG L+ E V + D+       P Y+YS+  + R+  A+ +++     +I YA+KAN+N  +L  L +LG G  +VS  EL   L AG DP+K +F+G GK   ++  A Q  +   NV+SE +L+ +   +   G K  + LRINPDVD + HPY++TG +++KFGI  ++         + PN L + G  CH+GS +T +  F DA   ++  ID ++A
Sbjct:    9 DGQLWAEQVPLADLANQYGT-PLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKA 227          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_HELPJ (Diaminopimelate decarboxylase OS=Helicobacter pylori J99 GN=lysA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 76/191 (39.79%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   69 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 635
            K PFYLY   +I +    YK+A +G  S+I YA+KAN+N  IL  L  LG GA  VS  E++ AL+AG  P K +F+G GK   ++  A +  + F+NV+S  +L+ I   ++  G K  + +RINP++D + HPY++TG K +KFG+   E L+ FL A K+    L+ V  H H+GS +  +D   +A+
Sbjct:   12 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLANLGSGADCVSIGEIQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKS--AFLEPVSVHFHIGSQLLDLDPITEAS 200          
The following BLAST results are available for this feature:
BLAST of FC876390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCDA2_ARATH1.566e-11289.19Diaminopimelate decarboxylase 2, chloroplastic OS=... [more]
DCDA1_ARATH2.672e-11288.29Diaminopimelate decarboxylase 1, chloroplastic OS=... [more]
DCDA_ORYSJ2.772e-10179.19Probable diaminopimelate decarboxylase, chloroplas... [more]
DCDA_PSEAE6.509e-3437.44Diaminopimelate decarboxylase OS=Pseudomonas aerug... [more]
DCDA_AQUAE9.399e-3336.53Diaminopimelate decarboxylase OS=Aquifex aeolicus ... [more]
DCDA_NEIMB1.039e-3137.50Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_NEIMA3.949e-3136.61Diaminopimelate decarboxylase OS=Neisseria meningi... [more]
DCDA_ARCFU3.949e-3138.57Diaminopimelate decarboxylase OS=Archaeoglobus ful... [more]
DCDA_VIBCH7.447e-3035.75Diaminopimelate decarboxylase OS=Vibrio cholerae G... [more]
DCDA_HELPJ7.447e-3039.79Diaminopimelate decarboxylase OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionC32004C01EF DevOvary1 Citrus clementina cDNA clone C32004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876390 ID=FC876390; Name=FC876390; organism=Citrus clementina; type=EST; length=671bp
GCAAGAAAGCTGACGGCTTTCTCTACTGTGAAGATGTTAGAGTTCAGGAT
GTCATGGAGACAGTTGAAAAAAGACCTTTTTATTTGTACAGTAAGCCTCA
GATCACTAGAAATGTGGAGGCTTATAAACAAGCCCTTGAGGGGCTGAATT
CTATCATTGGTTATGCCATTAAGGCTAATAATAACTACAAGATTTTGGAA
CATTTGAGAAAATTGGGTTGTGGAGCTGTTCTTGTTAGTGGCAATGAGCT
GAGGCTTGCTCTTCGAGCTGGATTTGATCCCACCAAGTGTATCTTTAATG
GGAATGGGAAGCTTTTGGAGGATTTGGTGCTGGCTGCACAAGAGGGTGTG
TTTGTTAATGTTGATAGTGAGTTTGACTTGGAGAATATTGTTGTAGCTTC
AAGAATTGCTGGCAAGAAGGTTAATGTGTTGCTTCGGATTAATCCTGATG
TGGATCCTCAGGTCCATCCTTATGTTGCTACTGGGAACAAGAACTCTAAA
TTTGGCATTAGGAATGAGAAGTTGCAATGGTTTTTGGATGCCGTGAAGGC
ACATCCTAATGAGTTGAAGCTTGTGGGGGCTCATTGCCATCTTGGTTCCA
CCATTACCAAGGTGGACATATTCAGGGATGCTGCAGTTCTTATGGTCAAT
TACATTGACAAAATCCGCGCC
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