FC876392

Overview
NameFC876392
Unique NameFC876392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876392_ssr133 microsatellite FC876392_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591 contig Ccv1_Contig591:14..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.303e-74
Identity = 136/169 (80.47%), Postives = 148/169 (87.57%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNFL+FRK            ARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYL   PW
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYL---PW 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.252e-73
Identity = 136/169 (80.47%), Postives = 147/169 (86.98%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNFL+FRK            ARYCKLLEENSFRG+T DFLYMLLFGAT LTG VLIGGMIPYLS SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYL   PW
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYL---PW 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.409e-71
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYL   PW
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYL---PW 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.409e-71
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYL   PW
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYL---PW 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYL   PW
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYL---PW 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.175e-37
Identity = 75/169 (44.38%), Postives = 109/169 (64.50%), Query Frame = 1
Query:  175 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF F+ +             R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YL   PW
Sbjct:    1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYL---PW 162          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 1
Query:  199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +L   PW     +L LG
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFL---PWVLMGFSLLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 1
Query:  199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +L   PW     +L LG
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFL---PWVLMGFSLLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 74/171 (43.27%), Postives = 102/171 (59.65%), Query Frame = 1
Query:  199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +L   PW     +L LG
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFL---PWVLMGFSLLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 73/170 (42.94%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  202 KQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            ++MP +TR Y  A ++ T    L+ ++PF+L  +  L+++ YQFWRLIT+F FF               RYC +LEE SFRGR ADF+YM LFGA  +            LS  F +I+FL  + T+M+VY+WS++NP I M+F G+ TFTA YL   PW   L +L LG
Sbjct:    9 EEMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYL---PWVLLLFSLLLG 164          
The following BLAST results are available for this feature:
BLAST of FC876392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DER22_ARATH4.303e-7480.47Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH1.252e-7380.47Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_ORYSJ3.409e-7176.33Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE3.409e-7176.33Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE1.692e-7075.74Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_DICDI7.175e-3744.38Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_PONAB6.074e-3643.27Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_MOUSE6.074e-3643.27Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL2_HUMAN6.074e-3643.27Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_CAEEL4.353e-3442.94Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32004C03EF DevOvary1 Citrus clementina cDNA clone C32004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876392 ID=FC876392; Name=FC876392; organism=Citrus clementina; type=EST; length=720bp
GGACGAAAAGAATTGAAAGCTCTCTCCCGATCTATCTCCACAATCAAAAA
CCCCCCTTTATTTTTCACTTCACTCAGAAATCTTTAAATTTTCAAAAAGA
AAAAAAAAATCAGCACACTTTCGGGGCTCTAGAGATAGATAGATAAACCA
TATAGTCAAAAAAATTAAAAGAAAATGGCTCAGGCTGTTGAAGATTGGTA
CAAACAGATGCCTATCATCACCCGCACGTATCTCACAGCCGCTATCGTCA
CCACCGTCGGCTGCTCTCTCGATATAATATCTCCTTTTAATCTGTGCTTG
CACCCAACGTTAGTGGTTAAGCATTATCAGTTTTGGCGCCTTATCACCAA
TTTTCTCTTCTTCCGGAAAATGGATTTAGATTTTTTGTTCCATATGTTTT
TTCTCGCACGATACTGCAAGCTTCTTGAAGAGAATTCCTTCAGGGGAAGG
ACTGCAGATTTCTTGTACATGCTTTTATTTGGAGCCACTTTTCTAACTGG
CACTGTTCTTATTGGGGGGATGATACCTTACTTGTCAGAATCATTTGCAA
AAATCATTTTCCTTAGCAATTCATTGACACTCATGATGGTTTATGTATGG
AGCAAACAAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATT
TACAGCAGCTTACTTACATGGGTGCCCTTGGGATTTCAGTCTCGTTGCGC
TAGCGCTGGGTGGATTGCTG
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