FC876397

Overview
NameFC876397
Unique NameFC876397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:101..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 209.149 bits (531), Expect = 5.439e-54
Identity = 102/122 (83.61%), Postives = 108/122 (88.52%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSL TVWAQHL+EE+RRRFYKN   SKKKAFT+YS
Sbjct:   13 SLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYS 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 3.526e-53
Identity = 99/122 (81.15%), Postives = 108/122 (88.52%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLN+VWAQHL+EEVRRRFYKN C SKKKAFTKY+
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYA 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 202.986 bits (515), Expect = 3.898e-52
Identity = 99/122 (81.15%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET          YVKTPRGLRSLNTVWAQHL+EEVRRRFYKN   SKKKAFT Y+
Sbjct:   13 SLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYA 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.440e-47
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIET          YV+TPRGLRSL TVWA+HL+EEV+RRFYKN   SKKKAFTKY+
Sbjct:   13 SLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYA 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 8.411e-47
Identity = 90/122 (73.77%), Postives = 102/122 (83.61%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKRA+R RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IET          YV+TPRGLRSL TVWA+HL+EEV+RRFYKN   SKKKAFTKY+
Sbjct:   13 SLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYA 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.028e-44
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SL FLPRKRAARHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIET          Y++TPRGLRSL TVWA+HL++EV+RRFYKN   SKKKAFTKY+
Sbjct:   13 SLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYA 134
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 84/121 (69.42%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+++E +RRFYKN   SKKKAFTKY
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKY 133
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 84/121 (69.42%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+++E +RRFYKN   SKKKAFTKY
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKY 133
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 3.308e-43
Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SLGFLPRKR++RHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ET          YV+TPRGLR+  TV+A+H+++E +RRFYKN   SKKKAFTKY
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKY 133
[Close]
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+++E +RRFYKN   SKKKAFTKY
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKY 133
The following BLAST results are available for this feature:
BLAST of FC876397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL32_ARATH5.439e-5483.6160S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ3.526e-5381.1560S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH3.898e-5281.1560S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3B_SCHPO6.440e-4774.5960S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO8.411e-4773.7760S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_ASPFU1.028e-4469.6760S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_RAT5.103e-4469.4260S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN5.103e-4469.4260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_MACFA3.308e-4368.6060S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_MOUSE4.320e-4368.6060S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004C08EF DevOvary1 Citrus clementina cDNA clone C32004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876397 ID=FC876397; Name=FC876397; organism=Citrus clementina; type=EST; length=367bp
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGACTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAATGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGTTGCTAATCCAAGAAGAAGGC
TTTCACAAAATACTCAA
back to top