FC876401

Overview
NameFC876401
Unique NameFC876401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10348 contig Ccv1_Contig10348:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.497e-83
Identity = 149/185 (80.54%), Postives = 168/185 (90.81%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 678
            MVLEAT+ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLG+ILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE   +KLEALL AVNNND SH+VHVP G NALSDVL
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVL 185          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.759e-56
Identity = 105/184 (57.07%), Postives = 140/184 (76.09%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 678
            M LEAT++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK   VLVT T +L +IL+    L+I G+++ +  +Q+AQLAL+HRQN  Q  RII FVGSP+K  K+ L  + ++LKKN VA+DI+NFGE  E N++KLEA +  VNNND SHL+ VPPGP+ LSD++
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDII 183          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.038e-47
Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D GRIL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADAL 183          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.038e-47
Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D GRIL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADAL 183          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.038e-47
Identity = 97/186 (52.15%), Postives = 133/186 (71.51%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            MVLE+T++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D GRIL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADAL 183          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.831e-46
Identity = 92/184 (50.00%), Postives = 125/184 (67.93%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVL 678
            MVLEAT+I IDNSEWM NGDY P+RF+AQ +  ++I   K   NPEN  G+MT+     +VL T T D G+ L+ MH L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+VA+DI++ GE    N   L+  + A N++DS HLV +PP P  LSD++
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLV 182          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 6.446e-45
Identity = 95/182 (52.20%), Postives = 130/182 (71.43%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNAL 666
            MVLEAT++ IDNSE+ RNGD+  +RF+AQ ++   I  AK   NPENTVG+++ AG   RVL T T++ G+ILA +H  +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LKKN+VA+DI+NFGE ++ NTE L+  +AAVNN   ++SHL+ V PGP  L
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLL 181          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.293e-42
Identity = 96/186 (51.61%), Postives = 123/186 (66.13%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            MVLE+T+IC DNS++ RNGDY P+R   Q +  NL+C  K + NPEN VG+MT++   V VL T TSD GRI + MH ++  GE+NL  GI++A L LKHRQ K  + RI+VFVGSPI HE+  L    ++LKK  V +DIV+FG D   N E L A + A+N  D   SHLV VP G + LSD L
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDAL 183          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.286e-39
Identity = 88/184 (47.83%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  133 LEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            L+     +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+      VL T T D GRIL+ +H ++  G++    GI VA LALKHRQ    + RII FVG+P++  +K L  + + LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADAL 668          
BLAST of FC876401 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 83/186 (44.62%), Postives = 122/186 (65.59%), Query Frame = 1
Query:  127 MVLEATLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGRILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVL 678
            M  EAT+I +DNS++MRNGD+ P+R QAQ +A  LIC +K Q NPENT+G++++A     VL T T+D+ +I   +H +E  G +   + I++A LAL+HRQ + Q+ RI+ F+GSPI  ++K L  + ++LKK  V +DI+NFGE +E N +KL   +  +N  D   SHL+ V PG   L D L
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTL 182          
The following BLAST results are available for this feature:
BLAST of FC876401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH3.497e-8380.5426S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI4.759e-5657.0726S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE4.038e-4752.1526S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN4.038e-4752.1526S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN4.038e-4752.1526S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO5.831e-4650.0026S proteasome regulatory subunit rpn10 OS=Schizos... [more]
RPN10_YEAST6.446e-4552.2026S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PSMD4_DROME2.293e-4251.6126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN5.286e-3947.83Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_SCHMA9.969e-3844.6226S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32004C12EF DevOvary1 Citrus clementina cDNA clone C32004C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876401 ID=FC876401; Name=FC876401; organism=Citrus clementina; type=EST; length=680bp
GGCTTTTTCCTTTTCTTATTTGACAAGCTTAAAATTTCTTACTTGAGTCT
TCTTTAACGACGCTGCTCTCATTCTTTCCCGAGCATTGGCATTTGTTCTG
TTTCTGATCTCAAAGAGTAGATAGCCATGGTTCTCGAGGCAACGTTGATC
TGTATTGATAATTCTGAGTGGATGCGTAACGGCGATTACGCTCCTAGTAG
ATTCCAAGCTCAAACTGAAGCTGCTAATCTCATTTGCGGAGCCAAAACTC
AGTTAAATCCTGAGAATACCGTAGGTGTTATGACAATGGCAGGGAAAGGG
GTTCGTGTTTTGGTCACTCCTACTAGTGATCTTGGCAGGATCTTGGCTTG
CATGCACGGTTTAGAAATAGGCGGTGAGTTGAATCTTGCTGCTGGGATCC
AGGTGGCTCAATTGGCTCTAAAGCATCGCCAGAACAAAAAGCAGCAACAA
AGGATTATTGTCTTCGTTGGAAGTCCCATCAAGCATGAAAAGAAAGTGCT
GGAGATGATTGGCAGGAAGTTGAAAAAGAATAGTGTAGCACTTGACATTG
TCAACTTTGGTGAAGACGATGAGGGGAATACGGAGAAGCTTGAAGCACTT
CTTGCTGCTGTGAACAACAATGACAGTAGCCACCTTGTTCACGTTCCTCC
TGGTCCNAATGCCCTTTCTGATGTGCTTCT
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