FC876408

Overview
NameFC876408
Unique NameFC876408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876408_ssr2 microsatellite FC876408_ssr2:2..15. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15178 contig Ccv1_Contig15178:6..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876408 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 87/179 (48.60%), Postives = 111/179 (62.01%), Query Frame = 2 
Query:  167 GSFPPHNTDSC-------FLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKS-GSCKMLEPVXXXXXXXXXXERNRGKLAGSTSTAEA-MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLK 676
            GS PP ++ S        FL  H  Q+Q          + WCLP ++D +ADD    VMA GK  G  KMLE V          ER +GK           M+QEIW+EFP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPSLK
Sbjct:   22 GSPPPPSSSSSLSSSSPSFLVLHHPQYQ----------NGWCLPCIEDTSADDCCDIVMAGGKRPGIFKMLETVKPPVKRTRK-ERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLK 189
The following BLAST results are available for this feature:
BLAST of FC876408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBX6_ARATH2.466e-3748.60F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
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Properties
Property NameValue
Genbank descriptionC32004D09EF DevOvary1 Citrus clementina cDNA clone C32004D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876408 ID=FC876408; Name=FC876408; organism=Citrus clementina; type=EST; length=723bp
GGAGAGAGAGAGAGAACACAAACCACACCAACACGGAGAAAGAAAGGGTG
GGGGGTGGGGTGTTGTGTGGGTTTTTGGCTTTCCGTCCGTCAGAGTCCGG
GGCATGGGAGAGCTGGCCATGCTTAGGCAGCTCATCGGTCAGCTTCAGCA
GTTCCTCCAACTCTACGGTTCTTTTCCTCCTCATAATACCGATTCCTGTT
TCCTCTATTTTCACTCTCATCAACATCAACAACTGCCCGAAGAACAAACG
CACCAGCTTCACAGATGGTGCTTGCCCGAAGTCGATGACGGTGCTGCGGA
TGATTATTACGGTTTTGTGATGGCAGCTGGAAAATCTGGAAGCTGTAAGA
TGTTGGAGCCTGTCAAACCTCCTCCTTCTAAGAGATCTCGAAAGGAGCGG
AACCGAGGAAAATTGGCTGGATCCACCAGTACAGCTGAGGCTATGGAACA
AGAAATTTGGAAAGAGTTCCCAGAAGACCTTTATGAAGCTGTCATTGCAC
GACTTCCTATTGCCACCTTCTTTCGCTTCCGTTCAGTTTGCCAGAAATGG
AATTCCTTACTGAAATCACATAGTTTCTCTCAGCATTGTGCCCAAGTCCC
GCAAGGAATTCCCTGGTTTTATACCATTACTCATGAAAATGTGAATTCTG
GAGCCATGTATGATCCTTCCCTAAAGAATGGCACATCCTACTATATTTCT
CTGCCTACAAGATGATCATCTTG
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