FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10351 contig Ccv1_Contig10351:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.169e-37
Identity = 83/152 (54.61%), Postives = 107/152 (70.39%), Query Frame = 1
Query:  190 LFLFLILS-PAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDS-DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L LFL++S     +  NDGL+R+GL+K KLD  NRL  +  SK+ E ++   R+YN  G+LG+S DTDIVAL N++DAQY+GE++IGTP Q FTVIFDTGSSNLWV   +C FSV              +Y +NGTSA+I+YGTGA+SGFFS
Sbjct:   11 LCLFLLVSFNIVSSASNDGLLRVGLKKIKLDPENRLAARVESKDAEILKAAFRKYNPKGNLGESSDTDIVALKNYLDAQYYGEIAIGTPPQKFTVIFDTGSSNLWV-LCECLFSVACHFHARYKSSRSSSYKKNGTSASIRYGTGAVSGFFS 161          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.209e-34
Identity = 83/162 (51.23%), Postives = 106/162 (65.43%), Query Frame = 1
Query:  157 MGTKFTA-IRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            MGT+  A + +A  L   L PA+ A   +GLVRI L+K+ +D+ +R+  + +S EE   R  +R  N  G  G  + DIVAL N+M+AQYFGE+ +GTP Q FTVIFDTGSSNLWVPSAKCYFS+              TY +NG  AAIQYGTG+I+GFFS
Sbjct:    1 MGTRSVALVLLAAVLLQALLPASAA---EGLVRIALKKRPIDENSRVAAR-LSGEEGARRLGLRGANSLGG-GGGEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACFFHSRYKSGQSSTYQKNGKPAAIQYGTGSIAGFFS 157          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.301e-32
Identity = 69/127 (54.33%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  259 LRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L+K+K++ +N   G+     +   R   R+Y + G+  DSD +++AL N+MDAQYFGE+ IGTP Q FTVIFDTGSSNLWVPS+KCYFSV              TY +NG SAAIQYGTG+ISGFFS
Sbjct:    1 LKKRKVNILNH-PGEHAGSNDANAR---RKYGVRGNFRDSDGELIALKNYMDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACLFHSKYRSTDSTTYKKNGKSAAIQYGTGSISGFFS 123          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.301e-32
Identity = 74/164 (45.12%), Postives = 102/164 (62.20%), Query Frame = 1
Query:  157 MGTKFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRT---PVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            MGT+  A+ +   + L+ +    A   +GLVRI L+K+ +D+ +R+       EE+ + +   P+R         + + DIVAL N+M+AQYFGE+ +GTP Q FTVIFDTGSSNLWVPSAKCYFS+              TY +NG  AAIQYGTG+I+G+FS
Sbjct:    1 MGTRGLALALLAAVLLLQTVLPAASEAEGLVRIALKKRPIDRNSRVATGLSGGEEQPLLSGANPLR--------SEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFS 156          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.482e-24
Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 1
Query:  235 NDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            +DG +R+ L KK+LD+ +    +   +    ++T           G SD+D V L ++++ QY+G + +G+P Q FTVIFDTGSSNLWVPSAKCYFS+              +Y  +G +  I YG+GAISGFFS
Sbjct:   26 SDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKT-----------GSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFS 149          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 63/150 (42.00%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVR-RYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            + L+   +A AL ND LVRI L  KK   I R +  +  + EE +      +YNL     ++ T    L N++DAQY+GE+ +GTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGT+ AIQYG+G++SG+ S
Sbjct:    3 MLLLCVFSALALTNDALVRIPL--KKFRSIRRQLTDSGKRAEELLADHHSLKYNLSFPASNAPTP-ETLKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLS 149          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 61/150 (40.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  193 FLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFS-VXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            FL+L L  A FA  +D +VRI L  KK   I R +  +    E+ +       +  G    +      L N+MDAQY+GE+ +GTP Q FTV+FDTGSSNLW+PS  C F+ +              TY +NGT  AIQYG+G++SG+ S
Sbjct:    3 FLYLFLF-AVFAWTSDAIVRIPL--KKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLS 149          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.461e-21
Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 1
Query:  184 VALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTV-SKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            V L +  +L+ ++FA+     +RI LRK     I R + +   S E+  ++ P+ +Y++  S   ++     L N++DAQY+G++ IGTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGTS  I YG+G++SG+ S
Sbjct:    6 VLLLILGLLASSSFAI-----IRIPLRK--FTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLS 152          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  235 NDGLVRIGLRKKKLDQINRLVGQTV-SKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            +  L+RI LRK     I R + +   S E+  ++ P+ +Y++  S    +     L N++DAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGTS  I YG+G++SG+ S
Sbjct:   18 SSALIRIPLRK--FTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPRTKEPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLS 152          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.932e-20
Identity = 59/148 (39.86%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  202 LILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETM-RTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            L L+    A P   LVRI L K     I R + +     E+ + + PV +Y+              L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +              TY +NGTS  I YG+G++SG+ S
Sbjct:    7 LPLALCLLAAPASALVRIPLHK--FTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLS 152          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ASPR_CUCPE1.169e-3754.61Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ1.209e-3451.23Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA4.301e-3254.33Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR_HORVU4.301e-3245.12Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ1.482e-2441.48Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_CHIHA8.130e-2342.00Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_CLUHA5.270e-2240.67Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_MOUSE4.461e-2137.66Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_RAT7.609e-2140.15Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN4.932e-2039.86Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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