FC876411

Overview
NameFC876411
Unique NameFC876411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10352 contig Ccv1_Contig10352:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876411 vs. ExPASy Swiss-Prot
Match: CLPP5_ARATH (ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 84/121 (69.42%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:  307 PNPSSNIDAHKLSHTFRPIGSRKPRKLVSIQKNLRNSSVRAVYSGKFWAPDRSYRQGIWSIRDDLQIPSSPYFPVHAQGPPPANPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQ 669
            PN SS  D+ KLS  F P+ SRK  KLVS +KN +NS+ +AVYSG  W P+    QG+WSIRDDLQ+PSSPYFP +AQG  P  PMVQERFQS+ISQLFQ+RIIRCGGAVDDDMANIIVAQ
Sbjct:   24 PNGSS-FDSPKLSLPFEPLRSRKTNKLVSDRKNWKNSTPKAVYSGNLWTPEIPSPQGVWSIRDDLQVPSSPYFPAYAQGQGPP-PMVQERFQSIISQLFQYRIIRCGGAVDDDMANIIVAQ 142
The following BLAST results are available for this feature:
BLAST of FC876411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CLPP5_ARATH8.876e-4069.42ATP-dependent Clp protease proteolytic subunit 5, ... [more]
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Properties
Property NameValue
Genbank descriptionC32004E02EF DevOvary1 Citrus clementina cDNA clone C32004E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876411 ID=FC876411; Name=FC876411; organism=Citrus clementina; type=EST; length=708bp
GATGCATTCTCACATTCATAATCAAGTTCACTGAGAAGTCAAGTTAGTGT
TAGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTA
TCGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGA
TAAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACC
GAAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATA
TGGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTC
GTCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACAC
CTTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAA
AGAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGG
GCTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTT
GCAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCAC
CTGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTT
TTCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGC
GAACATTATTGTAGCTCAGCTACTCTCTCTATCTTGATGCTATTGATCCT
CACAAGGA
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