FC876421

Overview
NameFC876421
Unique NameFC876421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10313 contig Ccv1_Contig10313:4..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.264e-95
Identity = 174/192 (90.62%), Postives = 179/192 (93.23%), Query Frame = 3
Query:  132 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIHP-WKTCYGP 704
            MATY PKNILITGAAGFIASHV NRL+R+YP+YKIVVLDKLDYCSNLKNL PSK+S NFKFVKGDIASADLVN+LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI       YGP
Sbjct:    1 MATYKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP 192          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.569e-95
Identity = 175/192 (91.15%), Postives = 179/192 (93.23%), Query Frame = 3
Query:  132 MATYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIHP-WKTCYGP 704
            MA+YTPKNILITGAAGFIASHV NRLIR+YP+YKIVVLDKLDYCSNLKNL PSK S NFKFVKGDIASADLVN LLITE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA+VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI       YGP
Sbjct:    1 MASYTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP 192          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.807e-93
Identity = 171/190 (90.00%), Postives = 176/190 (92.63%), Query Frame = 3
Query:  138 TYTPKNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIHP-WKTCYGP 704
            TY PKNILITGAAGFIASHV NRLIRNYP+YKIVVLDKLDYCS+LKNL PS +S NFKFVKGDIAS DLVN+LLITE+IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI       YGP
Sbjct:    5 TYKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP 194          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.015e-45
Identity = 95/186 (51.08%), Postives = 121/186 (65.05%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            K +L+TG AGFIASHV   L+ +YP+Y IV LDKLDYC++LKNL P     N+KF++GDI  +  V  L   E ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A    G + +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  P VI      YGP
Sbjct:   18 KRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDICDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAG-VEKFIYVSTDEVYGGSLDQEF---DESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGP 199          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.221e-43
Identity = 92/186 (49.46%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            K +L+TG AGFIASH+   L+ +YP Y I+ LDKLDYC++LKNL       N+KF++GDI  +  V  L  TE ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A     ++ +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  P VI      YGP
Sbjct:   18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEKFIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGP 199          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.221e-43
Identity = 92/186 (49.46%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            K +L+TG AGFIASH+   L+ +YP Y I+ LDKLDYC++LKNL       N+KF++GDI  +  V  L  TE ID ++HFAAQTHVD SF  +FEFT  N+YGTHVL+ A     ++ +FI+VSTDEVYG + +       E+S   PTNPY+++KA AE  V +Y   Y  P VI      YGP
Sbjct:   18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDICDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEKFIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGP 199          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 94/184 (51.09%), Postives = 122/184 (66.30%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYG--------ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            + ILITG AGFI SH+   L + +   KI+VLDKLDYCSN+ NL       NFKF KG+I  ++L+  +   E ID ++H AA THVDNSF  S +FT+NNI GTH LLE CK   ++++FI+VSTDEVYG        + +      ++E S L PTNPYSA+KAGAE LV +Y +S+ LPVI
Sbjct:   10 QKILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCK-NYKLKKFIYVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVI 192          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: TGDS_MIMIV (Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R141 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.218e-41
Identity = 87/176 (49.43%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            KNIL+TG  GFI S+  N +   Y    I V D  DYC++++N+   + ++  K +KGDI + DL+   L    IDTI+HFAA +HVDNSF NS  FT+ N++GTHVLLE  ++ G+++ F H+STDEVYGE D      + E S L PTNPY+ATKAGAE +V +Y  SY LP+I
Sbjct:    2 KNILVTGGLGFIGSNFVNHISSKYDNVNIYVYDIGDYCASVENV---EWNNRTKLIKGDIRNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLECSRMYGKLKLFFHMSTDEVYGEIDTTDT--SREVSLLCPTNPYAATKAGAEHIVKSYFLSYKLPII 172          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 78/179 (43.58%), Postives = 107/179 (59.78%), Query Frame = 3
Query:  156 ILITGAAGFIASHVCNRLIRN-----YPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 677
            IL+TG AGFI SH    LI        P  ++ V+DKL Y  NL+NL  + A   F FV+GDI    L+  L+     DT+ HFAA+THVD S   S  F  +N+ GT VLL+A  +   I RF+HVSTDEVYG  D  +    H    L P +PY+A+KAG+++L +AY +++G+ V+
Sbjct:    3 ILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVRGDICDEGLIEGLMARH--DTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAA-LRHHIGRFLHVSTDEVYGSIDTGSWAEGH---PLAPNSPYAASKAGSDLLALAYHQTHGMDVV 175          
BLAST of FC876421 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 74/186 (39.78%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  150 KNILITGAAGFIASHVCNRLIRNYPEYKIVVLDKLDYCSNLKNLIPSKASSNFKFVKGDIASADLVNFLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VIHPWKTCYGP 704
            K+ LITG AGFI       ++R   + +I VLDKL Y S+ + +   K +S F+FVKGDI+  + ++     E+ D ++HFAA++HVD S   +  F   N+ GT+ L EA  + G+ ++ IH+STDEVYG+   D      E + L P NPYSA+KA +++LV++Y +++ LP +I      YGP
Sbjct:    3 KSYLITGGAGFIGLTFTKLMLRE-TDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDISVQEDID-RAFDETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAV-LKGKAKKLIHISTDEVYGDLKADDPAFT-ETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRCSNNYGP 184          
The following BLAST results are available for this feature:
BLAST of FC876421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RHM3_ARATH4.264e-9590.63Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH5.569e-9591.15Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM2_ARATH6.807e-9390.00Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
TGDS_MOUSE9.015e-4551.08dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
TGDS_HUMAN2.221e-4349.46dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_BOVIN2.221e-4349.46dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_DICDI3.788e-4351.09dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
TGDS_MIMIV1.218e-4149.43Putative dTDP-D-glucose 4,6-dehydratase OS=Acantha... [more]
ACBB_ACTS53.008e-3243.58dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
SPSJ_BACSU1.545e-2839.78Spore coat polysaccharide biosynthesis protein sps... [more]

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Properties
Property NameValue
Genbank descriptionC32004E12EF DevOvary1 Citrus clementina cDNA clone C32004E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876421 ID=FC876421; Name=FC876421; organism=Citrus clementina; type=EST; length=706bp
GACTCTTCAAAAGATCACTGCGGTTTCTTCTCAGTTTCCATTTTCAACAC
AGTTTCTCTCTCTAGATTCGCGTTTTGGCATTTGGGTTTGACTCGTCTTC
GTTGATCTGATCGTCTTTAAGTTGATTTGCAATGGCTACGTATACCCCGA
AGAACATCCTCATCACTGGGGCTGCTGGGTTCATTGCTTCCCATGTATGC
AACCGGCTGATTCGTAACTATCCCGAGTACAAAATTGTTGTGCTTGACAA
GCTTGATTATTGTTCGAATCTGAAAAACCTAATACCCTCCAAAGCATCCT
CCAACTTTAAGTTTGTTAAGGGGGACATTGCCAGTGCTGACCTTGTCAAC
TTTCTTCTCATCACTGAGTCCATTGACACTATTATGCACTTTGCTGCGCA
AACTCATGTGGACAACTCTTTTGGAAATAGTTTTGAGTTTACCAAGAACA
ATATCTATGGTACTCATGTCCTCCTTGAAGCCTGCAAAGTGACTGGGCAG
ATCCGGAGGTTCATCCATGTCAGCACAGATGAGGTCTATGGGGAGACTGA
CGAGGATGCTGTTGTGGGTAACCATGAAGCTTCCCAACTCCTGCCAACAA
ATCCTTATTCTGCAACTAAAGCTGGAGCAGAAATGCTTGTTATGGCTTAT
GGTAGGTCATATGGGCTACCAGTGATACACCCGTGGAAAACATGTTATGG
ACCAAT
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