FC876423

Overview
NameFC876423
Unique NameFC876423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11204 contig Ccv1_Contig11204:279..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876423 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 5.048e-92
Identity = 166/219 (75.80%), Postives = 194/219 (88.58%), Query Frame = 3
Query:    3 VKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQG--DSSTRLA-PVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSA*F 650
            VKLELTASNVVYLRCAAEHLEMTEE+G+GNLI+QTETF NQVVL++WKDS+KAL +CD++L YA+ELNITK+CIESLA++ASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPK+++SDWWYED S LS PL+KRLI VMESRGIR++IIAGSLT+Y +K+LPGL RR+G  +SS R + P+  G   SEEEQK LLEEI +LL +QKGLV   F
Sbjct:   92 VKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSLTYYTRKHLPGLKRRRGGPESSGRFSTPLGSGNVLSEEEQKNLLEEIQELLRMQKGLVPTKF 310          
BLAST of FC876423 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.803e-34
Identity = 91/267 (34.08%), Postives = 134/267 (50.19%), Query Frame = 3
Query:    9 LELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVV--------EHGGPMQSPGG-------SVLWN-GISTGARPKNST--------SDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAP----------------------------VALGAPPSEEEQKLLLEEIDKLLPVQKGLVSA*FL 653
            ++LTA+N+  LRCAAE+LEMTEE  +GNLI +TE FL+ VVL +W+DS+  L++C+ + P+AE L I +RC ES+A KA  +P    W             GGP    GG       S  WN G   G   K S+        +DWW+EDVS L +  + R++  ++ +G+R ++I  ++T YA K+LPGL +     +T   P                            V         EQ++++E I  + P Q+  VS  FL
Sbjct:  124 VDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGGARGGPAAIRGGGGSGGTASPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLGATHDEPWAQASAAGVGGGGLHMMIISGAGGGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFL 390          
BLAST of FC876423 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.635e-32
Identity = 79/201 (39.30%), Postives = 118/201 (58.71%), Query Frame = 3
Query:    3 VKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSP------GGSVLWN---GISTGARPKNSTS------DWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALG 560
            V ++LTA+N+  LRCAAE+LEMTE+  +GNLI +TE FL+ VVL +W+DS+  L++C+ + P+AE L I +RC ES+A KA ++P    W    + G   SP      G S  WN     S    P  +T+      DWW+EDVS L +  + R+I  ++ +G+R E++   +  YA K+LPGL +  G +       A+G
Sbjct:  115 VPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRW---AYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIG 312          
BLAST of FC876423 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.267e-26
Identity = 72/219 (32.88%), Postives = 116/219 (52.97%), Query Frame = 3
Query:    3 VKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSA*FLFG 659
            +  E+T+SNV  L C +++LEMTEEY   NL ++TE +L  +V +N +  ++ L+  + +LP A+ELNI  RCI+++A KA  +     +  +E+     S  G +    +S   +      DWW ED+S L + LY+R+++ M+ RG+R E I  SL  YA++ L                         E ++ ++E I  LLPV+  +V   FLFG
Sbjct:  105 INFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEY-----SSSGRL---HMSRQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAEREL---------------------TKRSEHEQTIVETIVTLLPVENLVVPISFLFG 294          
BLAST of FC876423 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 3
Query:    3 VKLELTASNVVYLRCAAEHLEMTEEYGDGNLITQTETFLNQVVLRNWKDSLKALQTCDDILPYAEELNITKRCIESLAVKASTDPNLFGWPVVEHGGPMQSPGGSVLWNGISTGARPKNSTSDWWYEDVSTLSLPLYKRLIDVMESRGIRQEIIAGSLTFYAKKYLPGLNRRQGDSSTRLAPVALGAPPSEEEQKLLLEEIDKLLPVQKGLVSA*FL 653
            V  E+T  NV  L CAAE L+MT++Y D NL  +T+ FL+QV L +   ++  L++C+ +LP + +L I +RC++ +  KA  +                                P  +  +WW E++  L +  +  ++  M+ RG++   +A ++  Y +K L  L R       + +           +Q+ L++ I  LLP  KGL    FL
Sbjct:   94 VNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMF-----------------------------PCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTEKSLRDLVRDHSGRGVKYSDPGDNESDERSQQRDLVQSIVSLLPSDKGLFPVNFL 281          
The following BLAST results are available for this feature:
BLAST of FC876423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1044_ARATH5.048e-9275.80BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
NPH3_ORYSJ4.803e-3434.08Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
RPT3_ARATH2.635e-3239.30Root phototropism protein 3 OS=Arabidopsis thalian... [more]
Y5880_ARATH1.267e-2632.88BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH4.662e-2126.73Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC32004F02EF DevOvary1 Citrus clementina cDNA clone C32004F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876423 ID=FC876423; Name=FC876423; organism=Citrus clementina; type=EST; length=659bp
GTGTGAAACTTGAACTAACTGCCTCAAATGTTGTGTACCTACGATGTGCT
GCTGAGCATCTTGAAATGACAGAGGAATATGGCGATGGCAATCTTATTAC
ACAAACAGAAACCTTTCTCAATCAAGTAGTCCTTCGAAACTGGAAAGATT
CTCTAAAAGCACTGCAGACCTGTGATGATATTCTCCCTTATGCAGAAGAA
CTTAACATTACAAAAAGGTGCATTGAGTCACTAGCTGTGAAGGCATCTAC
TGACCCAAATTTATTTGGTTGGCCTGTTGTGGAGCATGGGGGGCCTATGC
AGAGCCCTGGTGGGAGTGTCTTGTGGAATGGGATAAGTACAGGGGCTAGA
CCAAAAAATTCAACTTCAGATTGGTGGTATGAAGATGTATCAACATTAAG
TTTACCTCTTTATAAAAGGTTGATTGATGTCATGGAATCTCGTGGTATTA
GACAGGAGATAATTGCTGGGTCCCTTACTTTCTATGCAAAAAAGTACCTA
CCTGGGCTGAACAGGCGTCAGGGTGACTCAAGCACCCGTCTTGCACCAGT
GGCTTTGGGGGCCCCTCCATCAGAAGAAGAACAAAAGCTTTTACTAGAAG
AGATTGATAAGTTACTCCCAGTGCAGAAGGGCCTAGTCTCTGCNTAGTTT
CTGTTTGGT
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