FC876425

Overview
NameFC876425
Unique NameFC876425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE  S+AEAK VK  D+ E
Sbjct:   17 LLQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCE 146          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ FL L  +LK   R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL E  + KE+ ELW EYE  S+AEAK VK  D+ E
Sbjct:   18 LLQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCE 147          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ FL L  +LK   R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE  S+ EAK VK  D+ E
Sbjct:   12 LLRFLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCE 141          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 64/132 (48.48%), Postives = 94/132 (71.21%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL +G R KEI  LW EYE  S+ EAK+VK+ D  E
Sbjct:    4 MLQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLE 133          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 69/135 (51.11%), Postives = 93/135 (68.89%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL++EYE  ST EAK VKD DK E
Sbjct:    9 IVPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFE 142          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.906e-30
Identity = 71/138 (51.45%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  268 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++F  +C +LKT KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK E
Sbjct:    5 LEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFE 141          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.236e-29
Identity = 60/132 (45.45%), Postives = 92/132 (69.70%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ F+ L  +LK   R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL +  +  E+ +LW EYE   TAEAK VK+ D+ E
Sbjct:   14 LLQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCE 143          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.044e-28
Identity = 62/133 (46.62%), Postives = 92/133 (69.17%), Query Frame = 1
Query:  274 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL----GEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            FL++   LKT +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ +     E A ++EI + W+ YE+ +  E + VKD DK E
Sbjct:   32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESA-SREILDDWLAYEKQTCLEGRYVKDIDKYE 162          
BLAST of FC876425 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.670e-26
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 1
Query:  265 VIDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GEGARAKEIDELWMEYEENSTAEAKIVKDFDKAE 660
            ++ FL++  +LK  +R G++   +   ESI+DHMYR+ ++ +++ D   ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C  L        AKEI + W+ YE  ++ EA+ VKD DK E
Sbjct:   48 ILAFLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYE 181          
The following BLAST results are available for this feature:
BLAST of FC876425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN1.842e-3352.27HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN1.194e-3250.76HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE1.560e-3252.27HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_DANRE5.926e-3248.48HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
YC0H_SCHPO1.011e-3151.11HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
HDDC2_DICDI1.906e-3051.45HD domain-containing protein 2 homolog OS=Dictyost... [more]
HDDC2_XENLA1.236e-2945.45HD domain-containing protein 2 OS=Xenopus laevis G... [more]
YGK1_YEAST3.044e-2846.62HD domain-containing protein YGL101W OS=Saccharomy... [more]
YB92_YEAST1.670e-2644.44HD domain-containing protein YBR242W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionC32004F05EF DevOvary1 Citrus clementina cDNA clone C32004F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876425 ID=FC876425; Name=FC876425; organism=Citrus clementina; type=EST; length=662bp
GATGATAAAAAAGATAAAGCCGAACAAATGGGAAGCGGAAGCCGTGGACT
GTTGCTCTGTAAATCATCGTCGTCACCCGTGTTCTTAATACCTTCATTCA
CTTGCAATAATCTCAGATTCAACAAAACAATCGCCAGTTCCAGAGCTCAT
CGAATGGCCACGGAAGCTTCGTCGTCATCCTCATCCGTCACCGGCGGTGA
CAGCATCAATCCTCTCGCTTCCTCATCTGTTAACGGCGCTGCTTTCTCTT
CTTCCTCTTCGTCCGTGATCGACTTCCTCTCCCTCTGCCACCGCCTCAAA
ACAACGAAGAGAGCAGGATGGGTAAAGAGAAATGTTAACAATCCAGAATC
GATAGCTGATCATATGTACAGAATGGGATTGATGGGTCTCATTATGGCTG
ACATTCCTGGCATTGACCGAGACAAGTGCATTAAGATGGCAATTGTTCAT
GACATTGCGGAAGCTATTGTTGGGGACATTACCCCTTCAGATGGAATTCC
AAAGGAAGAAAAGAGTCAACGAGAGCGAGAAGCTATAACCTACATGTGCA
AACTATTAGGAGAAGGGGCAAGAGCCAAGGAAATAGATGAGTTGTGGATG
GAGTATGAAGAAAATTCTACTGCAGAGGCCAAAATAGTCAAGGACTTTGA
CAAGGCGGAGAT
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